Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00771 GGAGACGCATGCCAAGTGCTCATGATTGTGTCCTTGTCCCACGCACCCAGATGCTACCCTTTTGTGTATTTTAAGACTCTCATCCTTTTCTATTCTTTTTCCCCCAGCCACCTCTCTTTTCTTTTCACTCTAATTCAATTCTCCTGCAATAAAAACAACAAATTTATTATTATTATTATTATTTTTAAAAATAGCAGTGCCGGAGACTCGATTCCAACCCGATGGAGGGAGATCGGTGATTGGGGGGCTAAGAAGATCGTAGGGGTAGAAGTGGAAAAAGGTATTGTGAAGAGTTGGGTGAGGGGAAGGGAAGAATGTCCTGCAAGGATGGTAGCAAAAACGGAATGGATAACGGGAAGTACGTCCGTTACACACCTGAGCAGCCTTGAGAGGCTGTATCACGATTGCCTGAAACCGAGTTCCATTCGCCGCCAACAGCTCATTCGCGACTGCCCCATTCTCTCCAACATCGAGCCCAAGCAAATCAAGGTTTGGTTCCAAAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCCTCCCGCCTCCAAGCTGTTAACAGGAAGTTGACTGCCATGAACAAGCTTCTCATGGAAGAGAATGATAGGTTGCAGAAACAGGTCTCTCAACTCGTCTATGAAAATGGCTATTTCCGTCACCACACCCAAAATACTACACAGCCAACCAAAGATACAAGCTGTGAATCAGCTGTGACGAGTGGTCAGCATAGTTTGCCAACTCAACATCCCCCACGAGATGCGAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCTCCTGCTCGGGATTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGCAGTCTAGTGATTTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAACATTTGGTTAGAGCAGAGATGCTGCCTAGTGGCTACCTGATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCTTGGAGTGTGCCAGAAGTGTTACGTCCACTGTATGAATCATCAACAGTGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGACAGATTTCACATGAAGTTTCTCAGTCCAACGTAACTGGGTGGGGCAGACGACCAGCAGCTCTACGAGCTCTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTCACCATTCTAGTGAATTCATCTCCTGACAAGTTAATGGGTCTAAATATTTCCTTTGCCAATGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCAATGCTATTACAGAATGTGCCCCCGGCCATTCTCCTAAGATTCCTACGGGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCATACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCTTATCAGGATCTCGTGTTGGAAATTATGGAGGTCAAGTTATACTCCCTCTAGCACACACAATTGAACATGAGGAGGTGTTTCTAGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAAGATACAATAATGCCCAGAGAAATGTTTCTTTTGCAGCTCTGTAGTGGAATGGACGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCTCTTCTACCTTCTGGATTTCGCATAATTCCTCTTGAATCTGGAAAGGAAGCTTCTAGCCCCAATCGCACACTTGACCTTGCATCTGCTCTTGATGTTGGCCCCAGTGTAAACCGAGCATCAAATGAATGTACTGGAAGTTCTAGCTGTACGAGATCTGTGATGACGATAGCATTTGAGTTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCACGTCAATATGTTCGGAGCATTATATCATCTGTCCAAAGAGTAGCATTAGCACTTTCTCCTTCTCATCTGAGTTCACATGCAGGGCTTAGGACACCATTGGGTACACCTGAAGCACAAACTCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAATGAGGGAAATGAATCTTTGCTGAAGTCCTTATGGCATTACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTGGAGACCACCCTAGTTGCATTACAGGATATAACTTTAGAGAAAATATTTGATGATCATGGACGAAAAATCCTCTTTTCGGAGTTCCCCCAGATTATTCAACAGGGTTTTGCATGTCTTCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCTGTCTCGTACGAAAGAGTTGTTGCTTGGAAGGTCTTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGACATTCTGTTCTTCTAAGTACACTTGTGTGTTTTATTGTATATGAGTGTTAGATAAAAGATTTACTCTACAAGACATTTGTGCTTTGTTGAATGGTCTTTTTTACTGTATTTGCACAAAATACTCGAATTGCGCATTATATGATTATTTATGTCTTAGCTATGCAACTTGTTTCCTTATTCAACCTCCAGC 3010 0.4425 GDACQVLMIVSLSHAPRCYPFVYFKTLILFYSFSPSHLSFLFTLIQFSCNKNNKFIIIIIIFKNSSAGDSIPTRWREIGDWGAKKIVGVEVEKGIVKSWVRGREECPARMVAKTEWITGSTSVTHLSSLERLYHDCLKPSSIRRQQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRHHTQNTTQPTKDTSCESAVTSGQHSLPTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHLVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNISFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEVFLEVIKLEGVAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSVNRASNECTGSSSCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHYSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00771 939 FunFam homeobox-leucine zipper protein ATHB-15 296 477 - -
Pste6g00771 939 MobiDBLite consensus disorder prediction 220 255 - -
Pste6g00771 939 CDD bZIP 169 208 - -
Pste6g00771 939 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 125 939 IPR044830 GO:0003700
Pste6g00771 939 Pfam MEKHLA domain 796 938 IPR013978 -
Pste6g00771 939 CDD homeodomain 122 177 IPR001356 GO:0003677
Pste6g00771 939 SMART START_1 260 470 IPR002913 GO:0008289
Pste6g00771 939 SUPERFAMILY Homeodomain-like 125 178 IPR009057 -
Pste6g00771 939 Gene3D - 295 476 IPR023393 -
Pste6g00771 939 MobiDBLite consensus disorder prediction 220 248 - -
Pste6g00771 939 CDD START_ArGLABRA2_like 255 470 - -
Pste6g00771 939 ProSiteProfiles START domain profile. 251 465 IPR002913 GO:0008289
Pste6g00771 939 Coils Coil 182 213 - -
Pste6g00771 939 Pfam START domain 261 469 IPR002913 GO:0008289
Pste6g00771 939 SMART HOX_1 112 180 IPR001356 GO:0003677
Pste6g00771 939 ProSiteProfiles 'Homeobox' domain profile. 125 176 IPR001356 GO:0003677
Pste6g00771 939 Pfam Homeodomain 124 175 IPR001356 GO:0003677
Pste6g00771 939 Gene3D - 122 181 - -
Pste6g00771 939 SUPERFAMILY Bet v1-like 260 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00771 Pste-Chr6 2951166 2960539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00771 125 891 Homeobox Transcription Factor Family AT1G52150 84.265 0.0 1346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste6g00771 START 3.1e-54 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00771 6 2951166 2960539 Pste6g00771 6 2951166 2960539 ECH