Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00740 AAGCCTTCTATACTACCTTTCTTATGTGGAATATTTCCATATCTGTTCTAACCTCCATCTTTAAGAGTTCCCCTGGAAACCTCTGAAATAAGATGGGTGGCATTGCATTCGGTCGCTTTGATGATTCTTTCAGTTTAAACTCAATCAAGGCCTATATTGCTGAGTTCCATTCAACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCTGCTGGGTTGGTGGCAGTTGCTGTTTGCCATGGTTTTGCACTCTTTGTTGCAGTTTCAGTTGGCGCCAACATCTCTGGTGGCCATGTAAACCCTGCTGTGACCTTTGGATTGGCTCTTGGTGGCCACATCACCATCCTCACTGGCATCTTCTACTGGATTGCACAGCTTGTAGGCTCCATTGTGGCATGTTTCCTTCTCAACTTTGTCACAGGAGGTTTGCCAACTCCAATCCACAGTGTGGCTTCCGGGGTTGGAAATGTACAAGGAGTTGTTATGGAGATCATAATCACATTTGGTTTGGTGTATACTGTGTATGCTACAGCAGCTGACCCCAAGAAGGGCTCATTGGGCACAATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGCAGGGCCATTCTCTGGTGGCTCAATGAACCCAGCACGCTCCTTTGGGCCTGCAGTTGTTAGTGGAGACTTCCACGACAACTGGATCTACTGGGTTGGACCACTTATTGGAGGTGGTTTGGCTGGCCTTATCTACGGCAATGTCTTCATTCGCTCTGACCATGCACCTCTTTCTAGTGAATTTTGATTTGATTAAGACCATGGTCTATGCAATTCATGTTTTTTGATAATAAAAAAGGAGGAAAAGCAATTCTTGCTTTCCTTTCTTTTTCTATCTATCTTTTTTTCTTTTAATTTATTTGTAAAGTGTGCTACTGTTTAATTTGGTGAGAATTCAAGAGGTTGGTGGTGTGCAGCTTTATTATCTTCAAAG 1025 0.438 MGGIAFGRFDDSFSLNSIKAYIAEFHSTLLFVFAGVGSAIAYGKLTSDAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGIFYWIAQLVGSIVACFLLNFVTGGLPTPIHSVASGVGNVQGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYGNVFIRSDHAPLSSEF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00740 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Pste6g00740 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste6g00740 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Pste6g00740 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Pste6g00740 248 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Pste6g00740 248 FunFam Probable aquaporin TIP1-1 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00740 Pste-Chr6 2819512 2821480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00740 1 246 Major Intrinsic Protein MIP AT3G16240 80.972 1.23e-142 398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00740 6 2819512 2821480 Pste6g00740 6 2819512 2821480 ECH