Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00737 CAACAACTGTTGTTTAAATTCCACTCTCTGGCTTCTTTGCTTGCTCTGTTCTTATAAGTTATACGCATACGCATGCTCACTTGTTTAAATAGTTTTGTGTTGCATAATTTGGAACCTAAATTTCACTGTGATGTCTACACCCTTAGAACATGATTACATAGGCTTATCAGGGCCTCCATCCATAACCATGGAGAAAAGCTGTGATAAGATATCCTCTTCAGTTTCCTCCAACCTCTCTTCTGAGGATGAGAATACCTCTTCTCTGAACTTCAAGGAGACTGAGCTCAGGCTTGGCTTGCCAGGTTCTAAGTCTCCTCCAGCTCCAGGGATCTCTCTTTTTCGCAAGGATTTGCAGAATTCCAAGAACCTTAAGAGGGGCTTCTCTGATGCCATTAGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGAAGTGGGTTTTCTCATCAACTGAGCCTCAGCCTCAGCCTCAGCCTCAGGCTGATTTCGGAAATGGTTCTAATGCCTCTGCACAATGCAACAAAGAGGTTGGTATGGTTCCTCAGTCTCAGAACATAGCTCAGGTTGCTGCAACAAATGAACATGCAACTGCTCCTTCTGCAAAAGCACAAGTTGTGGGATGGCCACCAGTTCGAAGTTTTCGTAAGAACACAATGGCCTATAATTTGGCAAAATGCAACAACGAAGCGGTAGCTGAGGAGAAATCAGGAGTTGGATGTCTTTATGTAAAGGTCGGCATGGATGGTGCCCCTTACCTCAGAAAGGTTGATCTGAAAACCTACACAAACTATAATCAACTTTGTTCAGCTCTTGAGAAAATGTTCAGCTGTTTTATCATTGATCAATGCAATTCCCGTGTGAAAGATGCATTAAGTGAGAGCGTTTTGAGGGATGCTCTTGATGGCTCTGAATATGCTCTAACATATGAAGATAAGGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGTATGTCTTGTCTAATGCTACCATAACTTGTCCCTTCAGGATGTTCACTGAATCATGTAAGAAACTGAGGATAATGAAAGGCTCTGAGGCAATCGGGCTAGCTCCAAGGGCTATGGGAAAATCTAGGAGCTAAATTCACTGCAGAATATGAAGAAGGTTTATAGTAGAATTTGAGATTATGGTTCTGTATGAAATAAAACAAAACGTGCCTAATGCAGCGTTTCAATTTCAATTTTCGTGTGTTTTAG 1220 0.4221 MSTPLEHDYIGLSGPPSITMEKSCDKISSSVSSNLSSEDENTSSLNFKETELRLGLPGSKSPPAPGISLFRKDLQNSKNLKRGFSDAISSSSSSSSSSSGKWVFSSTEPQPQPQPQADFGNGSNASAQCNKEVGMVPQSQNIAQVAATNEHATAPSAKAQVVGWPPVRSFRKNTMAYNLAKCNNEAVAEEKSGVGCLYVKVGMDGAPYLRKVDLKTYTNYNQLCSALEKMFSCFIIDQCNSRVKDALSESVLRDALDGSEYALTYEDKDGDWMLVGDVPWEYVLSNATITCPFRMFTESCKKLRIMKGSEAIGLAPRAMGKSRS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00737 324 MobiDBLite consensus disorder prediction 85 127 - -
Pste6g00737 324 SUPERFAMILY CAD & PB1 domains 196 287 - -
Pste6g00737 324 MobiDBLite consensus disorder prediction 22 49 - -
Pste6g00737 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 44 313 IPR003311 GO:0005634|GO:0006355
Pste6g00737 324 Gene3D - 191 290 - -
Pste6g00737 324 ProSiteProfiles PB1 domain profile. 196 308 IPR000270 GO:0005515
Pste6g00737 324 Pfam AUX/IAA family 49 317 IPR033389 -
Pste6g00737 324 FunFam Auxin-responsive protein 191 318 - -
Pste6g00737 324 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00737 Pste-Chr6 2810277 2812463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00737 200 280 B3 DNA Binding Superfamily AT4G23980 34.568 3.96e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pste6g00737 AUX_IAA 2e-77 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00737 6 2810277 2812463 Pste6g00737 6 2810277 2812463 ECH