Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00682 ATGGATCACACTTCTACTCCTACTAACCCTGCCTCATCTCAAGGGTCTTGTTCCAAGACAAACAGAAAAAATGAGAAAAAGGGTGCAAAAAAATGCAAAGGGGTGAGACTCTCCACCGACCCTCAAAGCGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAAATCTTGCAAAGCATGGTCCCTGGTGGCAGCAAGATGGACACAGTGTCTATGTTGGAGGAAGCTATTCAGTATGTGAAGTATCTCAAAACCCAGATTTGGCTTCACCAAACCATGATTAACTTCATGGATGAGAACAATAATATTGAGTCTTCTTCACTCTCATCACCAATGTTCATCAATGATTATAGCTACTTTCCTTCTGAACAGTTCATTTCACCTCATCAGCAGAACAATCCTAATCCATCATCAGTACTTGATTGTAGTAACATGCAGAATTTACCACACCTGCCACTGCCACAATGCAGCTTCCAAGGTGAAGAAGACACAACAACTAGCTACTTTGATGCATCATTGAAATATTGGCCAGCTTAA 546 0.4194 MDHTSTPTNPASSQGSCSKTNRKNEKKGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFMDENNNIESSSLSSPMFINDYSYFPSEQFISPHQQNNPNPSSVLDCSNMQNLPHLPLPQCSFQGEEDTTTSYFDASLKYWPA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00682 181 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 143 IPR045843 GO:0003700|GO:0006355
Pste6g00682 181 MobiDBLite consensus disorder prediction 1 47 - -
Pste6g00682 181 FunFam Transcription factor LAX PANICLE 40 103 - -
Pste6g00682 181 Gene3D - 41 95 IPR036638 GO:0046983
Pste6g00682 181 CDD bHLH_AtIND_like 38 100 - -
Pste6g00682 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 100 IPR036638 GO:0046983
Pste6g00682 181 Pfam Helix-loop-helix DNA-binding domain 47 87 IPR011598 GO:0046983
Pste6g00682 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 37 86 IPR011598 GO:0046983
Pste6g00682 181 SMART finulus 43 92 IPR011598 GO:0046983
Pste6g00682 181 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00682 Pste-Chr6 2548727 2549272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00682 31 116 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.276 1.35e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g00682 HLH 1.2e-08 No_clan