Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00658 AAAAGTTTCTCAAATTGGTCCAACCATGGCCAGTGCCACAGCATATGAAGAACATCTTCCAGCCTCACCAAATTGGCTTAACAAAGGTGACAACGCATGGCAACTAACAGCGGCAACACTCGTAGGTCTTCAAAGCGTGCCAGGCTTAGTAATCCTCTATGCCAGCATAGTGAAAAAAAAATGGGCTGTGAACTCAGCTTTCATGGCTCTCTATGCTTATGCAGCAGTTTTAATCTGTTGGGTGCTTCTCTGTTACCGCATGGCTTTTGGTGAGAAACTATTACCCTTCTGGGGCAAAGGTGCCCCAGCACTGGGGCAGAAGTTTCTGGTACACAGAGCTAGGGTTCCTGAGAGTGATCATCACTATAAGAATGGAACCGTTGAAAGCCCTACTTCTGAGCCCTATTATCCCATGGCTTCTCTTGTGTACTTTCAGTTCAACTTTGCTGCTATTACTCTTGTGTTGCTGGCTGGATCTGTGCTTGGGAGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGCTTGTGTTTTCTTACACTGTTGGGGCTTTTAGTCTTTGGGGTGGGGGGTTTCTCTACCATTGGGGGGCTATTGATTATTCTGGTGGCTATGTTATTCATCTTTCTTCTGGAGTGGCTGGTTTAACTGCTGCTTACTGGGTTGGGCCAAGATTGAAGGGTGATAGGGAGAGGTTCCCACCAAACAATGTGCTGCTAATGCTAGCGGGTGCAGGCTTGCTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAACGTTGATGCTTCCATTGCAGTGCTCAACACTAACATTTGTGCTGCCACTAGTCTTCTTGTGTGGACCTCTCTTGATGTCATCTTCTTTGGAAAACCTTCAGTCATTGGAGCTGTTCAGGGCATGATGACAGGACTTGTTTGCATCACTCCAGGAGCAGGACTCGTTCAATCTTGGGCGGCTATAGTGATGGGAATACTTTCAGGGAGTGTGCCATGGGTGACAATGATGATTCTTCACAAGAAGTCAAGTCTTCTCCAGAAGGTAGATGATACCCTAGGAGTGTTTCACACACATGCTGTGGCTGGCCTATTGGGTGGCCTCCTCACAGGTCTCTTAGCAGAACCTGAGCTTTGTAAACTCATATTACCTGTGACCAACTCAAAGGGTGCCTTCTATGGTGGTAGTGGTCGTGTTCAATTTTTGAAGCAATTAGTGGCAGCATGTTTCATTGCTGGATGGAACCTAGTCTCTACCACACTCATTCTTCTGTTCATACAATTGTTCATACCTTTAAGGATGCCGGATCACCAGCTCGAGATTGGCGACGACGCCGTCCACGGCGAAGAAGCTTATGCTCTTTGGGGTGATGGTGAAAAATATGACCCAACCAAACATGGATCATCAAGAGTAGATAAAGTTTCAGCATCACCCCATGCTAATGCAAGTGGAGCAAGGGGTTTCACTATAGATTTATGAGTCATGTGGGTATAGTTGTGTATAGTGATAGTGTTATGAAGCAACACAAATGAATGAGTGCTCATTTCTATGTAAGTTTGATATTACATAAGTATATGTAGCAATTTTGTTTGAATTAGGTAAGACTATTATAGATGATAAATTATCTT 1641 0.4516 MASATAYEEHLPASPNWLNKGDNAWQLTAATLVGLQSVPGLVILYASIVKKKWAVNSAFMALYAYAAVLICWVLLCYRMAFGEKLLPFWGKGAPALGQKFLVHRARVPESDHHYKNGTVESPTSEPYYPMASLVYFQFNFAAITLVLLAGSVLGRMNIKAWMAFVPLWLVFSYTVGAFSLWGGGFLYHWGAIDYSGGYVIHLSSGVAGLTAAYWVGPRLKGDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANVDASIAVLNTNICAATSLLVWTSLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSVPWVTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPELCKLILPVTNSKGAFYGGSGRVQFLKQLVAACFIAGWNLVSTTLILLFIQLFIPLRMPDHQLEIGDDAVHGEEAYALWGDGEKYDPTKHGSSRVDKVSASPHANASGARGFTIDL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00658 488 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Pste6g00658 488 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pste6g00658 488 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Pste6g00658 488 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Pste6g00658 488 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886
Pste6g00658 488 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Pste6g00658 488 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886
Pste6g00658 488 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Pste6g00658 488 FunFam Ammonium transporter 6 451 - -
Pste6g00658 488 Gene3D Ammonium transporter AmtB like domains 2 451 IPR029020 -
Pste6g00658 488 PANTHER AMMONIUM TRANSPORTER MEP2 9 459 IPR001905 GO:0008519|GO:0016020|GO:0072488
Pste6g00658 488 SUPERFAMILY Ammonium transporter 17 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00658 Pste-Chr6 2470441 2483580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00658 130 488 Inorganic Solute Cotransporters AT2G38290 74.652 0.0 535