Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00606 ATGAAGAGTCAAAGGTCAGTCTATTCCTGCTGCCTTGATAATCTCTCTAATGTCTTGTCGTATAAGAAATTTGCCCCTGAATTGATTTTTGGTATCCCCTACTTGAACACATACGACGGCCACACCATCCGCTATCCCGACCCACTAATCAAGGCTAATGACACCATCAAGCTGGACCTAGAAAGCAACAAGATAACCGATTTCATCAAATTTGATGTGGGAAATGTTGTCATGGTCACCGGAGGAAGGAACAGAGGCCATGTCGGTGTCATCAAGAACAGAGAGAAGCATAAGGGAAGTTTTGAGATCATCCATGTCCAAGATGCAACTGGTCATGAGTTTGCAACTCGCCTGGGCAATGTCTTCATCATTGGCAAAGGGACAACCTTGGGTATCTCTTCCCAAAGGCAAGGGTATCAAGTTGTCTATCATTGA 435 0.446 MKSQRSVYSCCLDNLSNVLSYKKFAPELIFGIPYLNTYDGHTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGHVGVIKNREKHKGSFEIIHVQDATGHEFATRLGNVFIIGKGTTLGISSQRQGYQVVYH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00606 144 Pfam Ribosomal family S4e 31 65 IPR013845 -
Pste6g00606 144 Pfam 40S ribosomal protein S4 C-terminus 108 133 IPR032277 -
Pste6g00606 144 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 31 135 IPR000876 GO:0003735|GO:0005840|GO:0006412
Pste6g00606 144 CDD KOW_RPS4 71 125 IPR041982 -
Pste6g00606 144 FunFam 40S ribosomal protein S4 30 68 - -
Pste6g00606 144 FunFam 40S ribosomal protein S4 71 138 - -
Pste6g00606 144 Gene3D - 29 68 IPR038237 -
Pste6g00606 144 SMART kow_9 70 97 IPR005824 -
Pste6g00606 144 Pfam KOW motif 73 106 IPR005824 -
Pste6g00606 144 Gene3D - 71 139 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00606 Pste-Chr6 2272791 2273601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00606 31 133 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 85.437 3.18e-61 187