LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00606	ATGAAGAGTCAAAGGTCAGTCTATTCCTGCTGCCTTGATAATCTCTCTAATGTCTTGTCGTATAAGAAATTTGCCCCTGAATTGATTTTTGGTATCCCCTACTTGAACACATACGACGGCCACACCATCCGCTATCCCGACCCACTAATCAAGGCTAATGACACCATCAAGCTGGACCTAGAAAGCAACAAGATAACCGATTTCATCAAATTTGATGTGGGAAATGTTGTCATGGTCACCGGAGGAAGGAACAGAGGCCATGTCGGTGTCATCAAGAACAGAGAGAAGCATAAGGGAAGTTTTGAGATCATCCATGTCCAAGATGCAACTGGTCATGAGTTTGCAACTCGCCTGGGCAATGTCTTCATCATTGGCAAAGGGACAACCTTGGGTATCTCTTCCCAAAGGCAAGGGTATCAAGTTGTCTATCATTGA	435	0.446	MKSQRSVYSCCLDNLSNVLSYKKFAPELIFGIPYLNTYDGHTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGHVGVIKNREKHKGSFEIIHVQDATGHEFATRLGNVFIIGKGTTLGISSQRQGYQVVYH	144

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00606	144	Pfam	Ribosomal family S4e	31	65	IPR013845	-
	Pste6g00606	144	Pfam	40S ribosomal protein S4 C-terminus	108	133	IPR032277	-
	Pste6g00606	144	PANTHER	30S/40S RIBOSOMAL PROTEIN S4	31	135	IPR000876	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00606	144	CDD	KOW_RPS4	71	125	IPR041982	-
	Pste6g00606	144	FunFam	40S ribosomal protein S4	30	68	-	-
	Pste6g00606	144	FunFam	40S ribosomal protein S4	71	138	-	-
	Pste6g00606	144	Gene3D	-	29	68	IPR038237	-
	Pste6g00606	144	SMART	kow_9	70	97	IPR005824	-
	Pste6g00606	144	Pfam	KOW motif	73	106	IPR005824	-
	Pste6g00606	144	Gene3D	-	71	139	IPR014722	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00606	Pste-Chr6	2272791	2273601	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00606	31	133	Cytoplasmic Ribosomal Protein Gene Family	AT5G58420	85.437	3.18e-61	187

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