Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00592 ATGACAAACATCATGGTCAAAATGGGAAAATCATGTTTCACTCACCACCCTACACTTAAATGTTTCTTCTTCTTCTTCATGTTATGTATTATCTCTTTTATAAATTGTCCTGCGCTTATTGCTTCAGTCTACATGGTTCGAGAAACGTTTAACTTCTTAGATATATGGTTGGGTCCTTACAATTGCTCATCCAATGGACAGAATGGTGATGCTGAGGATGGTAAGTCGAAAAAGGGTCAATATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGACGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCGGGGCTTACTGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATACTTCCAGGGGATCAGGAGACCGTGGAAAGGTGTCCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCTACTTTAGCTTCTAAGTGGCGTGGGGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCGAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCATCTGGGGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTAGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGTCGTAAAATAGTAATGGTTTTGGCTGCTACTAACTTCCCATGGGATATAGATGAGGCACTAAGGAGAAGGCTAGAAAAGCGTATATATATTCCGCTCCCTAATTTTGAGAGTCGTAAAGAGCTGATCCGGATCAATTTGAAGACTGTTGAGGCAAGTTGTGATGTTAATTACATAGTGGCCCCTGACGTCAATATAGATGAAGTGGCTCGTCGAACAGAGGGCTATAGTGGAGATGATTTGACAAATGTCTGTCGAGATGCTTCCTTAAATGGCATGAGGCGCAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCTAAAGATGAGATTTCAAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTAGGAAAAGTACAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACCGAGTTTGGATCTGCATAAATCCTGGAAAACATCAACTACAGTACTATTTTGTTTTTGTGCTACCACTTCATTTCTCCATTGGGTGGGTGGTTTGTATCTGTTTATTGATATTTCATTTGTTTTCTGACGTGATTCATTGTAGTTTTATGATGTTGGAGGGATCTTGAATTGTTAATCTGTATCTGAGTTCATTGAATATTGATGTAATGTAGACATGATTTCAAAGCAGTTCTTATGCTTTAATATACTAAACCTATATATTTAACTTCAGA 1451 0.408 MTNIMVKMGKSCFTHHPTLKCFFFFFMLCIISFINCPALIASVYMVRETFNFLDIWLGPYNCSSNGQNGDAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEASCDVNYIVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALGKVQRSVSQADIERHEKWFTEFGSA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00592 398 Pfam Vps4 C terminal oligomerisation domain 351 396 IPR015415 -
Pste6g00592 398 Pfam AAA+ lid domain 309 350 IPR041569 -
Pste6g00592 398 Pfam ATPase family associated with various cellular activities (AAA) 142 279 IPR003959 GO:0005524|GO:0016887
Pste6g00592 398 FunFam Katanin p60 ATPase-containing subunit A1 280 374 - -
Pste6g00592 398 PANTHER AAA DOMAIN-CONTAINING 65 397 - -
Pste6g00592 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 384 IPR027417 -
Pste6g00592 398 Gene3D - 100 389 IPR027417 -
Pste6g00592 398 ProSitePatterns AAA-protein family signature. 251 270 IPR003960 GO:0005524|GO:0016887
Pste6g00592 398 CDD RecA-like_KTNA1 107 277 - -
Pste6g00592 398 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 2 398 IPR028596 GO:0008017|GO:0008568|GO:0051013
Pste6g00592 398 SMART AAA_5 138 281 IPR003593 GO:0016887
Pste6g00592 398 Gene3D - 280 374 - -
Pste6g00592 398 FunFam Katanin p60 ATPase-containing subunit A1 100 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00592 Pste-Chr6 2220752 2223252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00592 94 390 Calmodulin-binding Proteins AT3G56690 39.216 4.93e-50 179