Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00570 atggatgatgggggtaatagcaattcctactcacttataagtaaatctttggtttctgcggacaatttttacatgtacatggatgcacaagtttctctcatttctcttacttactatggattttgcttggaaaatggaaactacacaattaagttacattttgcgaaaatcatgttcactgatgatgaaacattcaacaacttaggaaggcggatatttgacatctacattcagggacacttggtgaagaaggatttcaatatcatagaaaaagcaggaggaattggtaaggcaatcatcgaaccatttgctgttgttgtgactagtaataccttggagattcgattatattgggctggaaaagggacaactattattccatatagatcagtatatggtcctcttatcttagctatatctgttgaatcagaattaaagggcttagacatgcaaatgagtttatttactttgagacaaataaaagtagcaacaaataatttcaatgttagcaataagattggtgaaggaggatttggtccagtgtataagggatgtctatcagatggaacactaatagcagttaaacaactttcttctagatcaagacaagagggagatcaactattgttggtatacgaatatatggaaaacaatagcctcgcttgtgccttgtttggccctgaagaacaccaaataaaattaaattggccaacaagatgcaagatctgtatcggtattgctaaaggtttagcatacctccatgaagaatctagattgaagattgttcatagggacatcaaggcccctaacgtgttgcttgataaaaatcttaacccaaagatatctgactttggtttggccaaacttgatgaagaggacaacactcatattagcactcgaatagctgggacatatggatatatgcctccagaatatgccatgcatggatatttgattgataaggcagatgtctatagctttgaaattgttgccttggaaataataaatggaagaaataacactattcatcgacctaaagaggaatcattctctattgttgaatgggcacgtctattgaaagataaaggtgatttaatggagctagttgatagaagattgggtttagatttcaataaagaggaagcattggtgatgattaaggtagctctcttgtgcactagtgtgactgcaacacttagaccaaccatgtcatcagtggtgagcatgttagaaggaaaaactattgttcaagaagtgcttttagagacaagtgaagtattggatgagaagaagttggagaaaatgagacaatattattacaatgaattaaacatctcacaagaagagccattgatttcttcatcatctacttttgaagttgatgcataa 1389 0.0 MDDGGNSNSYSLISKSLVSADNFYMYMDAQVSLISLTYYGFCLENGNYTIKLHFAKIMFTDDETFNNLGRRIFDIYIQGHLVKKDFNIIEKAGGIGKAIIEPFAVVVTSNTLEIRLYWAGKGTTIIPYRSVYGPLILAISVESELKGLDMQMSLFTLRQIKVATNNFNVSNKIGEGGFGPVYKGCLSDGTLIAVKQLSSRSRQEGDQLLLVYEYMENNSLACALFGPEEHQIKLNWPTRCKICIGIAKGLAYLHEESRLKIVHRDIKAPNVLLDKNLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMPPEYAMHGYLIDKADVYSFEIVALEIINGRNNTIHRPKEESFSIVEWARLLKDKGDLMELVDRRLGLDFNKEEALVMIKVALLCTSVTATLRPTMSSVVSMLEGKTIVQEVLLETSEVLDEKKLEKMRQYYYNELNISQEEPLISSSSTFEVDA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00570 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Pste6g00570 462 SUPERFAMILY Protein kinase-like (PK-like) 150 419 IPR011009 -
Pste6g00570 462 Pfam Protein tyrosine and serine/threonine kinase 205 410 IPR001245 GO:0004672|GO:0006468
Pste6g00570 462 SMART serkin_6 167 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00570 462 Pfam Malectin domain 12 139 IPR021720 -
Pste6g00570 462 FunFam Putative LRR receptor-like serine/threonine-protein kinase 215 422 - -
Pste6g00570 462 Gene3D Transferase(Phosphotransferase) domain 1 216 426 - -
Pste6g00570 462 ProSiteProfiles Protein kinase domain profile. 167 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00570 462 Gene3D - 2 141 - -
Pste6g00570 462 Gene3D Phosphorylase Kinase; domain 1 142 215 - -
Pste6g00570 462 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 204 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00570 Pste-Chr6 2135307 2145211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00570 22 439 Receptor kinase-like Gene Family AT1G53420 54.016 3.91e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pste6g00570 PK_Tyr_Ser-Thr 4.5e-27 CL0016