LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00565	GAACTATGTCACTGAAGAAACAGAGTGGGGTTAGGGTTTAACTTCTCACTCTTCAAGGTTCAGACTTTTGTTTCCCTTCTGATTGAATCGAAGCGCCGCACCGGTTTTGTTTTCTGCTTAAGAAAATTGAAGCATCCTAAGGGTTATTCTAAGGTCGGGAGAAAAGATGAAGCAAGTGGTTGGAATGGTGGTTTCAAATAAGATGCAGAAATCAGTGGTGGTAGCAGTGGATAGACTATTCTACCACAAAGTGTATGATCGATATGTCAAGCGCACTTCTAAATTTATGGCTCATGATGAGAACAATCTTTGTAACATTGGTGACCGAGTTCGGTTGGATCCTTCTAGGCCATTGAGCAAACGTAAGCATTGGGTGGTTGCTGAAATTCTCAAGAAAGCACGTATATATGTTCCACCCTCAACCTCAACGTCAGTGCCTGAGAATGTGAGCTCCAGCTCTGAAGCACCTACTTCCTGAATTGGCTGAAGGTATTATAACGTATTTTGGCTGTCAATATCTACAGAAGTTGTAGCTGTTGGTATTGAAGTGAAACTGGAAATAAAGTTTAGCACTTTATCTGCATGAGTTGATCATAGTTTGCAACCATATTCAAGTTACTCATTTAAGGACAGTAATGTAAAAAACATTAGTTCTTATAGTTATATGGCAGGTTGTTAACTGTAGTCTAATGCATTTAATTGACAGTGTACTGTATGATACCATGCATTTCTAGTAACAATCGATTATAAGTTTGCATGCCATTGCATCTTGAATTTTCCTGAGCTATTATGTGTTAAAATAGCTTAGTGTAATGGAAATGGGAACATCAACCTTTTCCATTGTTATCATCATAGAAGGAATTTGAAATCTCCTTTATTTGTCATTCTTAGATTGTGTTCCAACTTCAAGTTTTTATGGTAGTAAAAATTTTAATATGCATAGGTCTATGGTTGATTAGCTTGTATCTTGATGGGTTAAAATAAATCTGCTGCAATTATACAGTCTTATTATAGATATCACTGTTGTGTGATCTTTATTGCCAGTATGCCATCTAGGCAAATGGATTGTAGTGTAGAGTATGATATAAAGTAGA	1094	0.3665	MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDENNLCNIGDRVRLDPSRPLSKRKHWVVAEILKKARIYVPPSTSTSVPENVSSSSEAPTS	103

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00565	103	Pfam	Ribosomal protein S17	6	73	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00565	103	PANTHER	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	1	83	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00565	103	Hamap	30S ribosomal protein S17 [rpsQ].	1	76	IPR019984	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00565	103	PRINTS	Ribosomal protein S17 family signature	52	62	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00565	103	PRINTS	Ribosomal protein S17 family signature	62	69	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00565	103	PRINTS	Ribosomal protein S17 family signature	20	43	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00565	103	Gene3D	-	1	98	IPR012340	-
	Pste6g00565	103	NCBIfam	30S ribosomal protein S17	2	71	IPR019984	GO:0003735\|GO:0005840\|GO:0006412
	Pste6g00565	103	SUPERFAMILY	Nucleic acid-binding proteins	2	90	IPR012340	-
	Pste6g00565	103	FunFam	30S ribosomal protein S17	1	101	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00565	Pste-Chr6	2098755	2100354	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00565	6	90	Cytoplasmic Ribosomal Protein Gene Family	AT4G30800	34.884	2.47e-06	42.0

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