Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00561 TTGATATTTAACTTTTTTTTCACTTTCGGTTTCATTCGGGTTCTCTCTTTGTCGTCCGACGGGCTTGCTCTTCTCGCTTTGAAGTCCGCCGTCGGCGAGCCCTCCGCCGCCTTCGCCGACTGGAACAACGGCGACCCCACGCCGTGCGCGTGGTCCGGAATAGCATGCGCGAACATCTCCGGCGAGGCGGACCCGCGCGTCGTCGGAATCGTCCTCGCCGGAAAAGGCCTCTCCGGCTACTTGCCGTCGGAGCTGGGCACGCTGCGCTTCCTCCGCCGCCTCAACCTCCACGACAATGCCTTCTCCGGCGTGCTCCCGCCGCAGCTCTCCAACGCCACCGCCCTCCACAGCCTCTTCCTCCACCGCAACAACCTCTCCGGCCCCATCCCCTCCTCCCTCTGCTCCCTCCCCCGCCTCCAAAACCTCGACCTCTCCGAAAACGCGTTCTCCGGCCACGTCCCGGAGAGTCTAAAAAACTGCAAGAATCTCCAGCGGTTAATCCTCGCCGGAAACAAATTCTCCGGCGAGATTCCCGGCGGCGTGTGGCCGGAGCTCCCAAACCTCGTCCAACTGGACCTGTCCGCAAACGAGTTAACCGGTTCAATCCCTAACGAAATCGGAACCCTAATTTCCCTCTCCGGCACGCTCAACCTCTCATTCAACCACCTCTCCGGTAAAATTCCGGCATCGTTAGGAAAATTACCGGCGACGGTGAGTTTCGACTTGAAAAACAATAACCTCAGCGGTGAAATTCCCCAAACGGGGTCGTTTTCAAATCAAGGCCCCACCGCGTTCCTCGAAAACCCTAACTTATGCGGGTTTCCGCTTAGAAAATCATGTTCCGGTTCAGACCGGGATATTTCTCGCGGTCCGGACCAGAACAAACCGGTTGACCGGTCTAAAGGTTTAACCCCCGGTTTAATTATTTTAATCTCTGTGGCTGATGCTGCTGTGGTGGCTTTGATTGGGCTTGTGATTGTTTACATTTATTGGAAGAAAAAGGATGATGAGAATGCTTGTAGTTGCATTAGGAAAAGAAGATTTGGTGAAGAAGAGAAAGGGGGTGTTTGTGTGTGTGGTGGGTTTTCATGTGTGCGTGGAGTGAAGAGTGATGATGATGATAATAATGGGGACTATGAGGTGGAGGGTGGTGATGGTGAGGGAGAAGGGGAATTGGTGAGGATTGATAAGGGTTTGAGTTTTGAGCTTGATGAGTTGTTGAGGGCTTCAGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAGGTGGTGTTAGGGAATGGGGTGCCTGTGGCAGTGAGGAGGTTGGGGGAGGGTGGTGAACAGAGGTATAAGGAGTTTGCTGCAGAGGTTATGGCCATTGCGAAGGTCAAGCACCCTAATGTTGTGAGGTTGAGGGCTTACTATTGGGCTCATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAACTTGGCCCATTCCTTTAGAGAAAGCCCGTTATCTGAAATGGTTGATCCATCACTGCTCCAAGAAGTGCGTGTTAAGAAGGAGGTTCTGGCTGTGTTCCATGTAGCATTAACTTGCACTGAGGGAGACCCTGATGCTCGTCCAAGGATGAAAACTGTGGGTGAGGAAAGGATTCAATCAAGAAAGCCGTTATCTGAAATGGTTCATCCATCGTTGCTCCAAGAAGTGCGAATTAAGAAAGAGGTGCTGGCCGTTTTCCATGTAGCACTGGCTTACACTGAAGGAGACTTTGCGGTTCAGCCTAGGATGAAAACTGTCTCTGAAAAACTTTGGAATATAATGTTGGAATTTTGCAGTGTTCTAGCTCTAGGATTGGTAGCACAA 1845 0.5176 LIFNFFFTFGFIRVLSLSSDGLALLALKSAVGEPSAAFADWNNGDPTPCAWSGIACANISGEADPRVVGIVLAGKGLSGYLPSELGTLRFLRRLNLHDNAFSGVLPPQLSNATALHSLFLHRNNLSGPIPSSLCSLPRLQNLDLSENAFSGHVPESLKNCKNLQRLILAGNKFSGEIPGGVWPELPNLVQLDLSANELTGSIPNEIGTLISLSGTLNLSFNHLSGKIPASLGKLPATVSFDLKNNNLSGEIPQTGSFSNQGPTAFLENPNLCGFPLRKSCSGSDRDISRGPDQNKPVDRSKGLTPGLIILISVADAAVVALIGLVIVYIYWKKKDDENACSCIRKRRFGEEEKGGVCVCGGFSCVRGVKSDDDDNNGDYEVEGGDGEGEGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIAKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLAHSFRESPLSEMVDPSLLQEVRVKKEVLAVFHVALTCTEGDPDARPRMKTVGEERIQSRKPLSEMVHPSLLQEVRIKKEVLAVFHVALAYTEGDFAVQPRMKTVSEKLWNIMLEFCSVLALGLVAQ 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00561 615 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
Pste6g00561 615 FunFam Leucine-rich repeat receptor-like protein kinase 391 483 - -
Pste6g00561 615 Pfam Protein tyrosine and serine/threonine kinase 414 497 IPR001245 GO:0004672|GO:0006468
Pste6g00561 615 Pfam DNA binding protein S1FA 299 359 IPR006779 GO:0003677|GO:0005634|GO:0006355
Pste6g00561 615 Gene3D Phosphorylase Kinase; domain 1 400 483 - -
Pste6g00561 615 Pfam Leucine rich repeat N-terminal domain 18 56 IPR013210 -
Pste6g00561 615 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 162 492 IPR046959 -
Pste6g00561 615 SMART LRR_typ_2 88 112 IPR003591 -
Pste6g00561 615 SMART LRR_typ_2 185 209 IPR003591 -
Pste6g00561 615 SMART LRR_typ_2 136 159 IPR003591 -
Pste6g00561 615 Gene3D Ribonuclease Inhibitor 185 282 IPR032675 -
Pste6g00561 615 Pfam Leucine rich repeat 137 198 IPR001611 GO:0005515
Pste6g00561 615 Gene3D Ribonuclease Inhibitor 16 184 IPR032675 -
Pste6g00561 615 SUPERFAMILY Protein kinase-like (PK-like) 413 502 IPR011009 -
Pste6g00561 615 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 17 182 - -
Pste6g00561 615 SUPERFAMILY L domain-like 18 277 - -
Pste6g00561 615 ProSiteProfiles Protein kinase domain profile. 408 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00561 Pste-Chr6 2083146 2094756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00561 545 600 Receptor kinase-like Gene Family AT1G67510 58.929 2.29e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pste6g00561 PK_Tyr_Ser-Thr 6.3e-07 CL0016
TF S1Fa-like Pste6g00561 PK_Tyr_Ser-Thr 6.3e-07 CL0016