Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00535 GGTTATGTTGGCATCCATAGTTCGGGGTTTCGAGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGATTCGTCCACTACAATTTTGTTTGATTCTTCATTAGTGCAACACGAATGTATCCCTCAAGCAATTTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTTCAGCAGGTTGATCCTGTTCCTGGTCAAGTTGCGGCTCTAGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCACGAATTTGAGAGGTTCAGTACATATCTTCCAGATATAAAGGCAGCTGTTTTCTATGGTGGAGTCAACATCAAGGTTCACAAAGATTTGCTCAAGAACGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAACAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAGCAAGTGATGATGTTTTCAGCTACACTCAGTAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAGATTTATGTTGATGATGAGGCCAAATTGACACTTCATGGCCTTGTACAGCACTATATCAAATTGCAAGAGTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGACGCTCTGGACTTCAACCAGGTAGTTATTTTTGTCAAAAGTGTCAGTAGAGCTGGAGAGTTGAACAAGTTGCTTGTGGAGTGTAACTTCCCTTCCATCTGCATACATTCTGCAATGGCACAGGAAGAGAGGCTGAAACGATACAAGGGCTTCAAGGAAGGGAAGCAAAGAATTCTTGTGGCAACAGATTTAGTAGGAAGGGGAATTGACATAGAACGTGTTAATATAGTTATTAACTATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGTCTTGCGATTACTTTTGTGTCCTCTACTGCAGACTCTGAGGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCCACATATATGCCAAACTGATGACGTTTTGGAACTATTAGGAGGCAGAACTTGAAAATATATTTTGTCGATTAGGGGATGGAATAGCTGGCATCTCATCAATTTGAGTGCTTTGACCCACTATTTAACAGAAGATATTATTGTTTAAATTGTAAGATTGTCCAATTTGAATGCTCCCTTTATTAGACTCAGCAGATGTATTTGTAGAAATACGTAGTCGGTGTAGCTTATGAATGTATTGTTATTTGCAGTGGCAAATCATCGATTCATTTACCCCATTATTAAGTAGAAGCAATAGCTGTTTTAAAATTTTAATGAATGCCTTGTTTGTGATATGGGTGAGCTGTCCTTGGATGAAGGCTCAATTGATGGCAGAATAGTTGACTGATGTTGCTATTGCTATTAGCAGCCCATGTAGTTTAGTATGCCGATTTGTCTGGTATGTACATATTATACAGCTTGCGCG 1621 0.401 GYVGIHSSGFRDFLLKPELLRAIDSSTTILFDSSLVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLGLNNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAGELNKLLVECNFPSICIHSAMAQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00535 391 SMART ultradead3 29 230 IPR014001 -
Pste6g00535 391 Gene3D - 4 222 IPR027417 -
Pste6g00535 391 Gene3D - 223 391 IPR027417 -
Pste6g00535 391 FunFam DEAD-box ATP-dependent RNA helicase 56-like 1 216 - -
Pste6g00535 391 FunFam DEAD-box ATP-dependent RNA helicase 223 391 - -
Pste6g00535 391 CDD DEADc_DDX39 7 216 - -
Pste6g00535 391 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 214 IPR014001 -
Pste6g00535 391 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 242 387 IPR001650 -
Pste6g00535 391 SMART helicmild6 266 347 IPR001650 -
Pste6g00535 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 361 IPR027417 -
Pste6g00535 391 Pfam Helicase conserved C-terminal domain 240 347 IPR001650 -
Pste6g00535 391 Pfam DEAD/DEAH box helicase 36 200 IPR011545 GO:0003676|GO:0005524
Pste6g00535 391 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 365 - -
Pste6g00535 391 CDD SF2_C_DEAD 227 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00535 Pste-Chr6 1989704 1993674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00535 1 391 Eukaryotic Initiation Factors Gene Family AT5G11200 81.481 0.0 707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00535 6 1989704 1993674 Pste6g00535 6 1989704 1993674 ECH