Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00528 CGGGTGCTATATAAAGTGGGAAAGAGATTGACAAGATATGTCACAAAGGCATTGGTAAGACAAGAGATAGGTGCGAGCAAGATGGTGCAATCAAGGAAATACAGAGGTGTGAGGCAACGGCATTGGGGGTCGTGGGTTTCAGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTAGGGACATTCGAGACAGCGGAGGAAGCAGCGAGAGCATACGACGAAGCAGCAATAATGATGAGCGGAAGAAATGCGAAAACAAATTTCCCAGTTGGGGAAAAGGAAAGGGAGAAAGAGAGGTGGTCGAGCAGAGTGTCAGAAGTAGTGAGCGAAAAGCTAAGGAAGTGCTGCAAGTGGACTTCACCATCACTGACATGCCTGAGGCTAGACACAGAGAATTCGCACATTGGAGTGTGGCAGAAGCGTGCAGACTCAAACTGGATCATGATGGTTGAGTTTCAGTTGGACAAAAAGAAGGACCCTCCTCTCCCTCCCCAGCCCAATTCCTCAGATCAGGAGCAGATCATGGCCCTCCAGATGATTGAGGAACTTCTCAATCGGAATTAATTGCTTCTCAATCTCCTCCTTCTTTTTTTACCTCTTTCTTTTTCTTTTTCTTTTTCTTTCTATACCCATCAATCCATTTTTCTTTTCCTCCCTTTCCCTTCAATTTTTGGC 678 0.4602 RVLYKVGKRLTRYVTKALVRQEIGASKMVQSRKYRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAIMMSGRNAKTNFPVGEKEREKERWSSRVSEVVSEKLRKCCKWTSPSLTCLRLDTENSHIGVWQKRADSNWIMMVEFQLDKKKDPPLPPQPNSSDQEQIMALQMIEELLNRN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00528 188 Gene3D AP2/ERF domain 32 93 IPR036955 GO:0003700|GO:0006355
Pste6g00528 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 149 - -
Pste6g00528 188 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Pste6g00528 188 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Pste6g00528 188 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Pste6g00528 188 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Pste6g00528 188 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Pste6g00528 188 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Pste6g00528 188 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Pste6g00528 188 FunFam Ethylene-responsive transcription factor 2 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00528 Pste-Chr6 1965515 1966332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00528 28 188 AP2-EREBP Transcription Factor Family AT1G15360 56.784 2.57e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste6g00528 AP2 1.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00528 6 1965515 1966332 Pste6g00528 6 1965515 1966332 ECH