Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00504 atggaaggtcgccggaggataacgctgtacgaccaaatgacaaccaccggaaacagtagcaatagcggcagtagcagcagagactcgttagcgagactcatgctcgacgacggcgttttcaacaaagccaaagccaaacccgaagccgagccgagccgaaaccggactctccaagacatcattcgcgaagagaagccaaacggcgacgcgaaggatcgcgttaacaacaacagcagcagcaacaacaacaacaactcttggagagccttcaaggagcggcttcggctcaagcgcggcgccgccatcggctcggcttggtcttctttcaattccaccgcacatcataataaccacaataagaacgatgcagatgatgacgattacgacggaaataacaatttacctgaaattcgtcatgattcttccgcttccgccgccgccgcctcagacgacgtcgtttcttcttctgcggtggagatcgcagcggccggagactcctccgagggagagaacaaccacgaggcggtggtcggcgtgtcgctgatggatctgttggaggaagcggagcaggaaatggatttatatagagcggtagtgagtgataacggtgatgacgtggcagaagagaatgggaagagagaagaagaaaatgaaaatgaaaatgaagaaaaacaagagggtgcgattgagtataactgctgcgtgtgcatggtaaggcataagggcgcggcgtttatcccctgcggacacacgttttgcagaatgtgttcaagggagatttgggtcagcagagggaactgcccgctttgcaataatttaattttggaaattctcgatattttctga 846 0.0 MEGRRRITLYDQMTTTGNSSNSGSSSRDSLARLMLDDGVFNKAKAKPEAEPSRNRTLQDIIREEKPNGDAKDRVNNNSSSNNNNNSWRAFKERLRLKRGAAIGSAWSSFNSTAHHNNHNKNDADDDDYDGNNNLPEIRHDSSASAAAASDDVVSSSAVEIAAAGDSSEGENNHEAVVGVSLMDLLEEAEQEMDLYRAVVSDNGDDVAEENGKREEENENENEEKQEGAIEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNLILEILDIF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00504 281 CDD RING-HC 233 270 - -
Pste6g00504 281 ProSiteProfiles Zinc finger RING-type profile. 233 271 IPR001841 -
Pste6g00504 281 MobiDBLite consensus disorder prediction 39 71 - -
Pste6g00504 281 MobiDBLite consensus disorder prediction 1 86 - -
Pste6g00504 281 MobiDBLite consensus disorder prediction 109 150 - -
Pste6g00504 281 Coils Coil 206 226 - -
Pste6g00504 281 MobiDBLite consensus disorder prediction 201 224 - -
Pste6g00504 281 MobiDBLite consensus disorder prediction 202 224 - -
Pste6g00504 281 SUPERFAMILY RING/U-box 232 277 - -
Pste6g00504 281 Pfam Zinc finger, C3HC4 type (RING finger) 231 274 - -
Pste6g00504 281 MobiDBLite consensus disorder prediction 9 29 - -
Pste6g00504 281 MobiDBLite consensus disorder prediction 117 134 - -
Pste6g00504 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 281 IPR013083 -
Pste6g00504 281 PANTHER OS01G0917900 PROTEIN 3 281 - -
Pste6g00504 281 SMART ring_2 233 270 IPR001841 -
Pste6g00504 281 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00504 Pste-Chr6 1891202 1893098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00504 4 281 C3H Transcription Factor Family AT3G25030 35.664 5.08e-41 140