Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00427 ATGACCAACCTCAACATGATTCTTCAGTTCTTGTCTTTGTTGCTGTTCCTTCTGATGCCAGTTTCATCTCAGCCTGACCAGCTTTTGTATGATGGATTCAAGGGTTTGGGAAGCAACAACATGACCCTTAATGGGGTAGCTGAGATAGAGTCAAATGGGGTGTTGAAACTCACCAATGATTCAAGTAAAGTGATAGGTCATGCTTTTTATCCAACTCCTTTTCAGTTCAAGAACTCTAGTGAGGGTAAAGCTTTCTCCTTTTCTACCTCTTTTGCTTTGGTTATTGTTCCTGAGTTTCCAAAGTTGGGAGGGCATGGCCTTGCTTTTACAATTGCACCTACTAAGGATCTGAAGGCTCATCCAGCCCAGTATCTTGGTCTTCTTGACTCTAGTGACATGGGGAAGTTCTCCAACCACCTTTTTGCTGTGGAGTTTGACACAGCCAAAGATTTTGAGTTTGGGGATATCAATGATAACCATGTTGGAATTGACATCAATAGTTTGGCTTCCAATGCTTCTGCTCCTGCAGGTTACTACACTGGGAATGATGATTCAAGCAAACAGAATCTGACTCTCCAAAGTGGGAATCCTATTCTAGCTTGGGTTGATTATGATGCTTCTCAAAGTGTTGTTAATGTCACAATTTCTGCATCTTCTACCAAACCTAAAAGGCCACTCTTGTCCTTTCATGTGGATCTTTCACCAATCTTTGAGAAGTCCATGTATGTTGGGTTCTCTGCATCAACAGGGTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTCAAAATCAATGGACCAGCTCCACCACTTGATCTCTCTTCCCTCCCACAGCTTCCAGGGCCAAAGAAGAAACACACATCTCTAATAATTGGGGTTTCAGTCTCTTGTGTTGTTCTTGCATTGTGTGCTGTCTTATTTGGCATCTACATGTACAGAAGGCACAAGAATGCTGATGTTATAGAAGCTTGGGAGCTTGAGATTGGGCCACACAGGTACTCCTACCAAGAGCTAAAGAAAGCAACTAAAGGTTTCAAGGACAAACAGCTACTTGGACAAGGTGGATTTGGGAGTGTTTACAAAGGAACATTGCCAAATTCCAAGACCCAAGTTGCTGTTAAGAGAATTTCACATGACTCCAAACAAGGCCTGAGGGAATTTGTGTCAGAAATAGCCAGCATAGGGCGGCTTCGCCACCGGAATTTGGTTCAGCTTCTGGGGTGGTGTCGCCGCCGTGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGGAGTTTAGACAAGTACTTGTTTGATGAACCAGAAACAATCCTAAGTTGGGAGCAAAGGTTTAAGATCATCAAGGATGTTGCTTCAGCCCTTTTGTACCTGCATGAGGACTATGAGCAGGTGGTGGTACATAGAGATGTGAAGGCTAGCAATGTGCTGCTGGATGGTGAACTCAATGGAAGACTAGGAGATTTTGGATTAGCAAGGTTGTATGAACATGGAGCTAACCCAAGTACCACAAGGGTGGTTGGGACATTGGGCTATTTGGCACCTGAGGTGCCTAGGACAGGGAAGGCCACTCCTAACTCAGATGTTTTTGCATTTGGTGCACTTTTACTAGAGGTGGCATCTGGGCTAAGACCACTTGAGCCAAAGGCTTTGCCAGAAGACATGGTTTTGGTTGATTGTGTATGGAACAAATTCAAACAAGGGAGAATACTTGATATGGTGGACCCTAGACTAAATGGTGTTTTTAACGAAAGAGAGATGCTCATGGTGCTGAAATTGGGGCTTCTATGCTCAAATGGTGCACCCAATGCTAGGCCAAGCATGAGACAGGTAGTGAGGTTCTTGGAAGGAGAAGTTGGTTTACCAGATGAGCTGAGAAAGTCAGGAGATTTAAGTTACCAGGAGGGTTTTGATGAATTCTTGCACACACTTGAACCTTCTTCCATTGATCAGACGAGCACAGGTTCTTATGATAGAAATAGAGACATGCATGTTAGTTTTCCTTCTTCTACTGATACATCTCTTTATACTCTCCATGGTAAAGGAGAAACAAGGTGA 2061 0.4381 MTNLNMILQFLSLLLFLLMPVSSQPDQLLYDGFKGLGSNNMTLNGVAEIESNGVLKLTNDSSKVIGHAFYPTPFQFKNSSEGKAFSFSTSFALVIVPEFPKLGGHGLAFTIAPTKDLKAHPAQYLGLLDSSDMGKFSNHLFAVEFDTAKDFEFGDINDNHVGIDINSLASNASAPAGYYTGNDDSSKQNLTLQSGNPILAWVDYDASQSVVNVTISASSTKPKRPLLSFHVDLSPIFEKSMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPGPKKKHTSLIIGVSVSCVVLALCAVLFGIYMYRRHKNADVIEAWELEIGPHRYSYQELKKATKGFKDKQLLGQGGFGSVYKGTLPNSKTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPETILSWEQRFKIIKDVASALLYLHEDYEQVVVHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPEVPRTGKATPNSDVFAFGALLLEVASGLRPLEPKALPEDMVLVDCVWNKFKQGRILDMVDPRLNGVFNEREMLMVLKLGLLCSNGAPNARPSMRQVVRFLEGEVGLPDELRKSGDLSYQEGFDEFLHTLEPSSIDQTSTGSYDRNRDMHVSFPSSTDTSLYTLHGKGETR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00427 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 285 IPR013320 -
Pste6g00427 686 Pfam Legume lectin domain 28 277 IPR001220 GO:0030246
Pste6g00427 686 FunFam L-type lectin-domain containing receptor kinase S.4 423 629 - -
Pste6g00427 686 Gene3D - 28 269 - -
Pste6g00427 686 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00427 686 FunFam L-type lectin-domain containing receptor kinase S.4 24 271 - -
Pste6g00427 686 Pfam Protein tyrosine and serine/threonine kinase 349 616 IPR001245 GO:0004672|GO:0006468
Pste6g00427 686 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Pste6g00427 686 MobiDBLite consensus disorder prediction 649 686 - -
Pste6g00427 686 SUPERFAMILY Protein kinase-like (PK-like) 328 626 IPR011009 -
Pste6g00427 686 PANTHER - 19 623 - -
Pste6g00427 686 Gene3D Transferase(Phosphotransferase) domain 1 423 632 - -
Pste6g00427 686 FunFam Lectin-domain containing receptor kinase A4.3 331 422 - -
Pste6g00427 686 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Pste6g00427 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Pste6g00427 686 CDD lectin_legume_LecRK_Arcelin_ConA 27 267 IPR001220 GO:0030246
Pste6g00427 686 CDD STKc_IRAK 352 618 - -
Pste6g00427 686 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00427 Pste-Chr6 1545172 1547232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00427 21 624 Receptor kinase-like Gene Family AT3G55550 61.375 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pste6g00427 PK_Tyr_Ser-Thr 3.7e-45 CL0016