Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00426 TTCTACGTCTTTATTATGATTCATCACACAATTCATTAATCATTGACGTTGGTTCAGCCACACCCTCTCCTCTCATGGAGGACTCATGGCAAAACTGGCTCTCCCATCTGGGTATGAATGACGGTTTTAGTTTTACCAACGCTGAAGAGATGCTAAGGTTCAACAGCGATAGTTTTGTAGCCAAACAGGAATACTCTCCTTGTTTGAACAACAGCAGCCAAGAGGAATTAGGTAGTTGTTACTTCCCTATAAGGGGTGCAGAGAGCCATGCAAAGCCAAGGGAGAACAACTTCAACAGAGGAACAAAAAGGGCAAGAACCTCTTCCGAGACCCAGCATCATATAATGTCAGAGAGAAAAAGGAGACAGGATATAGCGGAGAAATTCATTGCCCTCTCAGCTATTATACCTGGCTTGAAGAAGATAGACAAGGCGACTGTGCTTGGGGAAGCCATAAATTACATGCGACAACTTGAACAACGCATAGCGGTGCTGGAAAAAGGGAATGATAATAATAAAAGTATAAAGTCAGTGATGGTGACGAAATCAGGGTTGTGTTCCGCTTCGGCGTCATGCAATGAAGTTATCCCTGAAGTTGAAGCAAGAGGCTTAGATAAGGATGTACTGATTAGAATCTATTGCCACAAACGAAAGGGCATCATGCTCAAGCTATTGGCCCTACTAAAAGATGTTCATCTCTCAATAGCCAGTACCAGCGTATTGCCGTTTGGAAACTCTATTCTCAGCATTATCATAATTGCCCAGATGACTGAAAAATACAACTTAACCATGAACGATTTGGTTAACAAAGTGAAGCAGATCTTTTGAAAGTAAGTTATTGTACGTATGATGTGTCATCCGTCATCCGTCATCCGTCATCCGTCATCCAGAGGTATAACTTAACCATGACATGTAACACTACCCTATTGGGAGATGGAAAAACAGCCATTGCCAGATTACATGCATTCAAAGCTACTTAGATGTGCTCCAATACAGTTTTTGCATCATCAAGGATTAATGTCCATTACCTTCATCCATACACCATAAATTGAAAACTATATATGCTTCTATGTTTGGGTTCAATCAAATGCAAATTCTACTCAACTTTAATTACGTT 1116 0.4077 MEDSWQNWLSHLGMNDGFSFTNAEEMLRFNSDSFVAKQEYSPCLNNSSQEELGSCYFPIRGAESHAKPRENNFNRGTKRARTSSETQHHIMSERKRRQDIAEKFIALSAIIPGLKKIDKATVLGEAINYMRQLEQRIAVLEKGNDNNKSIKSVMVTKSGLCSASASCNEVIPEVEARGLDKDVLIRIYCHKRKGIMLKLLALLKDVHLSIASTSVLPFGNSILSIIIIAQMTEKYNLTMNDLVNKVKQIF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00426 250 SMART finulus 90 139 IPR011598 GO:0046983
Pste6g00426 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 145 IPR036638 GO:0046983
Pste6g00426 250 PANTHER BHLH TRANSCRIPTION FACTOR 35 248 - -
Pste6g00426 250 MobiDBLite consensus disorder prediction 66 93 - -
Pste6g00426 250 Pfam Helix-loop-helix DNA-binding domain 87 134 IPR011598 GO:0046983
Pste6g00426 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 133 IPR011598 GO:0046983
Pste6g00426 250 Gene3D - 74 149 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00426 Pste-Chr6 1544488 1545869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00426 37 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.326 3.70e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g00426 HLH 6.6e-10 No_clan