Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00425 ATGAACGTGATAACAGTGGCAGACGCAAAGGGAAATGGAGCGTGGCATTCAAGAGCGAGTATATGTGAAGTTGGTGGTTGGTGGTTGATGGATCTGTGGCACCGGTCGACTGAATTTGATGATTATTATATTCCTTTGGAGAGAAGATACATAGAGCATGGGATGGAGGATTCATGGGTAAATGGGGATCTTGACAAGGAAATGGATTGCGGGAAGGGTTTGTTAGATAGTACTGACGATGAGGACTTCCTCAGAAACATATTTGAATTCGAGCAAGAGCATGAGCATGAGCATGAGCAAGAGCAAGAGCAAGCAGCAGTAGCGGGTTTCTCTTCAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGCGAAAGCGAAAGCGAAAGTGATCAGTCCCTGCGCAACGCCACCGTTTTGTCACCCAGGAACTACCTCACCCCAGGCCCCCAACCCAGAAGGCCCAATCTATGTCCCAAGAAGTCCAGAACTTCCTCTCAGACCATCCATCACATTATGGCCGAGAGAAGACGTAGACAAGAACTCACCCAGAGGTTCATAGCCCTCTCTGCCACCATTCCCGGCCTCACCAAGACGGACAAGGCTTCTGTACTTCGAGCAGCAATAGATTATGTGAAAGAACTTCAAGAAAGGGTACAGGAGCTGGAGAAACAAGACAAAAGAAGGAGTGGAGAGGCAGTAATATTAGAGAAGAAACATGATCCAAATGACCCTTTCACTGAAACCAACTCTGGCATCCTTTCCCAGATGGAAGCCAGAGTATTGGGGAAGGAGGTGCTCATCGAGATCCACTGTGAGAAAGAATTTGGCATTGAGCTTAAAATATTGGACCACCTTGAAAATCTTCATCTCAATGTCACCGGTAGCAGTGTCTTGCCATTTGGAAATTCTGCTCTCTGCATTACCATCACAGCTCAGATGGGTGACGCATACCGAATGACCGTGAATGATCTAGTGAAAAATCTAAGACAAGTTCTCTCAAATTCATATGTGCTGAGCGACAGAGATCCGTACTAGTGTATCAAAGAACGAGTTGTACTTGTAGTGCAAAGAAGGAATTGGGAAGGAAGTTTTAATTTTGTTCATCTCTTTGATTTTCGCTTGTTTTCGTGTTGATCCCAACATTAATAAACAAATGTGTCTTAACTGAATTTATGCCCCGCTTCTACTTCGATATATATATACATAGCGAGG 1209 0.4458 MNVITVADAKGNGAWHSRASICEVGGWWLMDLWHRSTEFDDYYIPLERRYIEHGMEDSWVNGDLDKEMDCGKGLLDSTDDEDFLRNIFEFEQEHEHEHEQEQEQAAVAGFSSERERERERESESESESDQSLRNATVLSPRNYLTPGPQPRRPNLCPKKSRTSSQTIHHIMAERRRRQELTQRFIALSATIPGLTKTDKASVLRAAIDYVKELQERVQELEKQDKRRSGEAVILEKKHDPNDPFTETNSGILSQMEARVLGKEVLIEIHCEKEFGIELKILDHLENLHLNVTGSSVLPFGNSALCITITAQMGDAYRMTVNDLVKNLRQVLSNSYVLSDRDPY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00425 343 MobiDBLite consensus disorder prediction 110 128 - -
Pste6g00425 343 MobiDBLite consensus disorder prediction 93 167 - -
Pste6g00425 343 Coils Coil 203 230 - -
Pste6g00425 343 PANTHER BHLH TRANSCRIPTION FACTOR 95 332 - -
Pste6g00425 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 231 IPR036638 GO:0046983
Pste6g00425 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Pste6g00425 343 SMART finulus 170 219 IPR011598 GO:0046983
Pste6g00425 343 MobiDBLite consensus disorder prediction 129 143 - -
Pste6g00425 343 Pfam Helix-loop-helix DNA-binding domain 168 214 IPR011598 GO:0046983
Pste6g00425 343 Gene3D - 161 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00425 Pste-Chr6 1531037 1533591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00425 160 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.826 1.48e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g00425 HLH 3.3e-10 No_clan