Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00423 GAAATGCAGGATTCTGATTTCTTTAACCAAAGCCACAAGATTGAGTCACTGGATCAGGAGGATCAGATATTTCGAGAGATTATGCATCAGCCAGGTTTTTATTCTAACTGCGAGACTCGGTCTCCAAAAATTCAAAGTAAACCAATCCATTGTGGTAGTGGTTATACATCCCTTGCCAACAAGAGTGTGATGAAGAATAACAGCTCCAACATGATGTTCCCAATGGCAGAAGAGAAACCTGCCACTGCCACTTCCCCAACCGCGTACATTCTTTCTTTTGATGACTCCACCGTAGTAGCGGCTACTCACCAAAACTACGGTGGCAAACAGCCCTACCCTGAAGAAGTAGTAGTAGGGAGTGGTGGCGCATGTCTTCCCTCAAAAGGGGTCTCATATAAACATCATCATGATATTGAACCTAAGGCCAATCCAACTTCAAGGAGAGGCAGAAGTTCTGCGGAAACTCTAGACCATATAATGACTGAGAGAAAAAGGAGACGGGAACTCACAGAGAGATTCATCGCACTTTCAGCCACCATACCTGGCTTAAAGAAGATTGACAAGGCCACTATACTTAGCGAAGCAATCACTCATGTGAAAAGACTTAAAGAACGTGTAAGGGAGCTAGAAGAACAGCGCAAGAAGACAAGGGTAGAGTCAGTGTCATTCGTTCATCAGAGATCTCACATTGCAACTGACGAGGGCACCATATCTGGTGCAATAGACTCTGATGAGTGCTATAGAACCAATGAAGCACTTCCTACAGTGGAAGCAAGAGTGTTTAACAAAGATGTACTCCTTCGGATTCACTGCAAAATACAAAGTGGCATTTTGCTAAAAATTTTGGACCATCTTAGTAGTCTCGATCTCTCTACAATCAGCAACAGTGTAATGCCATTTGGGAGTTCAACTCTTGACATCAGCATTATTGCTCAGATGGGTGACAAATTCAACGTAACAATGAGCGATCTAGTGAAAAACCTGAGACTAGTTCTCTTGCAGTCATCTGAAGTACAATAATGATCCATACTAGTGAATCAATTATGGAAGGTGTTTGCTGATCGATCAGAAAATTCTGCAAGTTCTAGCTCTCCTTATTTGTGTGTTATCTTGGCTCTGGAATTAGGTTACTGTATTGTTGAAGAGAGAGAATCTACTACTGTTTGATGAATGGAATGAAATACGATTGAAATCACGATGTTTACAAATTATGGCAGCGGAATATAGAGCTATATAGATGATCGCACAGTGTTCACTTTTCAGCACTAGAGCATCTAGCTAGGTTTTTGGCACTCAGTTTTGGTAAACTGAACGTCCTCCCAAGTTATTTGTGGAATAAGCATATACGCTCCTATCCGACTCCATGTACTGCCTGCTCATGCTTCGCATAATTAATATAATATTCATATTGCCATGACAAAGGTAGTATAATAGTACTGGTTCTAGTTCAAGGATTTGGAAGTATTGGATATATCTAATATTGCTCTATTGTAATAATGAAGTTTCTTTTCTTATTTTATCTTTTGCTTGTCCTCAATTTATATATATAAAAAATG 1556 0.401 EMQDSDFFNQSHKIESLDQEDQIFREIMHQPGFYSNCETRSPKIQSKPIHCGSGYTSLANKSVMKNNSSNMMFPMAEEKPATATSPTAYILSFDDSTVVAATHQNYGGKQPYPEEVVVGSGGACLPSKGVSYKHHHDIEPKANPTSRRGRSSAETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILSEAITHVKRLKERVRELEEQRKKTRVESVSFVHQRSHIATDEGTISGAIDSDECYRTNEALPTVEARVFNKDVLLRIHCKIQSGILLKILDHLSSLDLSTISNSVMPFGSSTLDISIIAQMGDKFNVTMSDLVKNLRLVLLQSSEVQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00423 339 SMART finulus 159 208 IPR011598 GO:0046983
Pste6g00423 339 MobiDBLite consensus disorder prediction 134 153 - -
Pste6g00423 339 PANTHER BHLH TRANSCRIPTION FACTOR 34 334 - -
Pste6g00423 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 228 IPR036638 GO:0046983
Pste6g00423 339 Coils Coil 192 219 - -
Pste6g00423 339 Gene3D - 153 223 IPR036638 GO:0046983
Pste6g00423 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Pste6g00423 339 Pfam Helix-loop-helix DNA-binding domain 158 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00423 Pste-Chr6 1522168 1524417 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00423 141 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.271 2.20e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g00423 HLH 2e-07 No_clan