Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00421 ATGAACGGTGAAATCTTCTTACCCTCAAGCTCAACGACCACCACAGCTAACTTTTTCCTTCCCAAACTTGAAACCACCTTGGAGGGAATCGGCGCGGTGGTGGGAGAACAGGTTCTCTTCGGAACGACGCCGTCTTCGGAGACGCCCAAGAAGAAGGCGGATGGCGTGTCCTCGGCTCCCAACAAGAGCTACCGCGGAGTCAGGAAGCGCCCGTGGGGGAGGTGGTCTGCTGAGATACGCGACCGGATCGGCCGGTGCCGCCACTGGCTGGGAACCTTCGACACTGCGGAGGAGGCAGCGCGTGCCTACGACGCCGCGGCGAGGCGCCTGAGGGGTGCTAAGGCGAGGACCAACTTTAAGATACCCTCCGTGTTGCCACTTTCGGCTGATGGTGGTGCGGTTAAGCCCAAAAGTGGTGGCAACAATGCTAGCAAGTGTTCCTCTGTGGAGCAGTTGTTCAGTGGAGTGCCTCAAGCTCGAAGAGAGAATGGGGTTTCAAGTTTAGCACTAGAATGGTGCATGGATTAG 528 0.5777 MNGEIFLPSSSTTTTANFFLPKLETTLEGIGAVVGEQVLFGTTPSSETPKKKADGVSSAPNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSADGGAVKPKSGGNNASKCSSVEQLFSGVPQARRENGVSSLALEWCMD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00421 175 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Pste6g00421 175 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Pste6g00421 175 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Pste6g00421 175 MobiDBLite consensus disorder prediction 41 67 - -
Pste6g00421 175 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Pste6g00421 175 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Pste6g00421 175 Coils Coil 96 116 - -
Pste6g00421 175 SUPERFAMILY DNA-binding domain 63 120 IPR016177 GO:0003677
Pste6g00421 175 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Pste6g00421 175 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Pste6g00421 175 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 52 141 - -
Pste6g00421 175 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00421 Pste-Chr6 1489884 1490411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00421 28 126 AP2-EREBP Transcription Factor Family AT1G80580 67.308 1.65e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste6g00421 AP2 1.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00421 6 1489884 1490411 Pste6g00421 6 1489884 1490411 ECH