Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00411 ATGGAACAGGGTCAATGTTGGACAAAGAGGAAGCAATACTCTTTGAGTTCTACTCTTGGTTCACCCACAAACCCTTCCTCCTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCTAACAATTCTCTTGGTGGTTGTGTGTGGCCACCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGAGATAGAGCAAGGTTAAAGCAACAACCCTCTAGTCCCCACAATGAAATTCTATGCCTTGACCTTGAAACTCAACATGTACAACTCCATAATAAGCCAGTTCAAAGTCCTTTTGCTTCTTTGGGTGGTTTCCTATACCCTTCTCCAGTTTGTGGATTGGCTTATAAAAAAACTAACCCTAATTCTGATCCTGATTTTGCTGCTTCACCTTCTTCATCATCACCCTCGCCTTCCAAGGCCTTATTGGCTCCTCCATCAGTCAATAGCTGCAGAGAGCAAACCATGAATATTCCACTTTATGATTCCTCTATTCTGCACAAGATTTCTCCTAATTCTTCTGAATCATGGCCAAATTTAGCTGAAGATCAAAGATTCTATTCATGTAAGCTCCACCATCATGATGATATTGCAAAGAAACCCTCAAAGGGTAACAAAGGAGATAATGATGATGGGGCTATGAGGTTGAATAATGTTGTGAATAGAACACACCCATCTTTGCAGTTTGAGAATCCAAAAGAACCGGATCATATAAGTTGCAAGAAGAGGAAAACAGATGCTTATTCCTCAGCTCCATTTTCTCCAAATCCAAGCTCAGTTGATAGACAACATGTGCAGCCAAAGATGTTTGAGTTTAGCCCTAGCTCAAATGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCAAGGTATAGTAATAATAAATAG 942 0.4098 MEQGQCWTKRKQYSLSSTLGSPTNPSSYGDSWEEQAFAEDANNSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCLDLETQHVQLHNKPVQSPFASLGGFLYPSPVCGLAYKKTNPNSDPDFAASPSSSSPSPSKALLAPPSVNSCREQTMNIPLYDSSILHKISPNSSESWPNLAEDQRFYSCKLHHHDDIAKKPSKGNKGDNDDGAMRLNNVVNRTHPSLQFENPKEPDHISCKKRKTDAYSSAPFSPNPSSVDRQHVQPKMFEFSPSSNEELDLELRLGNRSRYSNNK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00411 313 MobiDBLite consensus disorder prediction 246 261 - -
Pste6g00411 313 Gene3D Classic Zinc Finger 51 102 - -
Pste6g00411 313 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Pste6g00411 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Pste6g00411 313 PANTHER OS07G0101800 PROTEIN 26 306 - -
Pste6g00411 313 MobiDBLite consensus disorder prediction 240 313 - -
Pste6g00411 313 MobiDBLite consensus disorder prediction 266 290 - -
Pste6g00411 313 SMART c2h2final6 55 77 IPR013087 -
Pste6g00411 313 MobiDBLite consensus disorder prediction 1 30 - -
Pste6g00411 313 MobiDBLite consensus disorder prediction 140 164 - -
Pste6g00411 313 Pfam C2H2-type zinc finger 55 79 - -
Pste6g00411 313 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00411 Pste-Chr6 1442307 1443248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00411 1 91 C2H2 Transcription Factor Family AT5G06070 57.292 2.88e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste6g00411 zf-C2H2_6 1.4e-05 CL0361