Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00398 AGCTTTCCTGTATGTTTTGTTTGTGATTCTCAAAGACACTTGACAAACACGTTTGAGTTTCTCTTTCTGATCATGGCCAGACCCCAACAACGTTATCGTGGAGTCCGGCAAAGGCACTGGGGCTCTTGGGTGTCTGAAATTCGGCACCCTTTATTGAAGACTAGAATATGGCTAGGAACGTTTGAAAATGCAGAAGATGCAGCAAGAGCATATGATGAAGCGGCTAGGCTGATGTGTGGGCCAAAAGCACGCACGAATTTCCCATATAACCCGAATGAAGCACATTCATCATCATCCAAGCTTCTCTCTGCCACTTTAACTGCCAAGTTACATAAGTGTCACATGGCCTCCCTTTCCCTTCAAATGGCCAAGCCTCAGGCTCAGAACAAAGAGCAGCCTCAACCATCACACTGCTCCAATCCATTTTCCTTTTCTGGATCACTCGCTGATAACAGACACCAACACCAGGACCTAAGGTGGCCGTGGCTACAAGGTAATCACGTTGAAGAAGTTGAAGTTGAAGTTTCCCATCAACAGTTTCAGCCTGTCCTCCAAGATGATCACATTGAGCAGATGATACAGGAGTTGCTTCATTATGGATCAATTGAGTTTTGCTCTGTTAGCTCTTCCTAG 633 0.4566 SFPVCFVCDSQRHLTNTFEFLFLIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFENAEDAARAYDEAARLMCGPKARTNFPYNPNEAHSSSSKLLSATLTAKLHKCHMASLSLQMAKPQAQNKEQPQPSHCSNPFSFSGSLADNRHQHQDLRWPWLQGNHVEEVEVEVSHQQFQPVLQDDHIEQMIQELLHYGSIEFCSVSSS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00398 210 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Pste6g00398 210 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Pste6g00398 210 MobiDBLite consensus disorder prediction 123 146 - -
Pste6g00398 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 148 - -
Pste6g00398 210 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Pste6g00398 210 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Pste6g00398 210 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Pste6g00398 210 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Pste6g00398 210 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Pste6g00398 210 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Pste6g00398 210 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00398 Pste-Chr6 1333033 1333765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00398 25 207 AP2-EREBP Transcription Factor Family AT5G25190 62.295 9.82e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste6g00398 AP2 7.4e-11 CL0081