Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00374 ATGGATCTTCAAAGGCGAGAGCCATGCCCTTCTCAAAATTTGAACATCATCACATTTGCTCATACTATTCCCTGCCAAAAACCTCCCATTGACACTCAAACAAAGAGAAATCAGATAGAAAACGAAGATCAAAAACACCCCCATGATTCAGTTCCTCGGGTTTTACTGGATCTAAGTCTCTCTAACAAGGATTCAGTTGATGATGACTCAAAGCCAGAACTCAACCTCCTCAATTCTTTCCATACTAATTTCTCTGAGAATTCATCAGAATCTAGTCAGGGAAATGAACTGGATCCCCGAGTTTTCTCATGCAATTACTGCCAACGAAAATTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTGGCAAGAAGAGGGTACAAAGCTGGTGCAGCAGATTTTGGACACGCATACTCCAACATGCCTTTTCTGCCTTCACATGGCTTATACAACAAAGCACTTGGAATTCAGGTTCATTCTATGATTAACAAGCCTTCTTATCAAACACTCCCTTTTGGGGTGTGCCATTCCAATGGATGGCAGAGGCAACCTTTGGATTCACAGCCAGCAATTGGGAGCTTTTGTGTAGGGGCAGAAACTGAGTCATCTTTGGCTGATAGTGTTCCAAAGTTAGGCAAGCTTTCCACAAGTCTGGTGACAGAGGGGTTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCTCTTAAGCTCTAA 777 0.426 MDLQRREPCPSQNLNIITFAHTIPCQKPPIDTQTKRNQIENEDQKHPHDSVPRVLLDLSLSNKDSVDDDSKPELNLLNSFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHAYSNMPFLPSHGLYNKALGIQVHSMINKPSYQTLPFGVCHSNGWQRQPLDSQPAIGSFCVGAETESSLADSVPKLGKLSTSLVTEGFGGYCFGSITHLKSKQEKLQKLDLSLKL 258
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00374 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Pste6g00374 258 Gene3D Classic Zinc Finger 78 141 - -
Pste6g00374 258 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Pste6g00374 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Pste6g00374 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 258 IPR044246 GO:0009788
Pste6g00374 258 FunFam Zinc finger protein 2 79 148 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste6g00374 Pste-Chr6 1249899 1250675 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00374 30 258 C2H2 Transcription Factor Family AT5G10970 40.816 1.86e-39 136
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste6g00374 None None None
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g00374 6 1249899 1250675 Pste6g00374 6 1249899 1250675 ECH