Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00352 ATGAGCCTTCTGTTGATGTTCAAAACCTACCAAAAGGTTCAAATGCAGGGCGTTGCAGTGGGTCGCGCAGTGGATTTGACCATGTTGGATGGGTATGATCAACTTATAAATGAATTAGAGGAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATACATGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTAGGAGATGATCCATGGCTGTGA 228 0.4298 MSLLLMFKTYQKVQMQGVAVGRAVDLTMLDGYDQLINELEEMFDIKGQLQHRNTWEIVFTDDEGDMMLVGDDPWL 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00352 75 SUPERFAMILY CAD & PB1 domains 10 74 - -
Pste6g00352 75 Gene3D - 5 75 - -
Pste6g00352 75 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 74 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste6g00352 75 ProSiteProfiles PB1 domain profile. 8 75 IPR000270 GO:0005515
Pste6g00352 75 Pfam AUX/IAA family 9 44 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00352 Pste-Chr6 1173019 1173246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00352 8 74 B3 DNA Binding Superfamily AT3G61830 71.642 1.32e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pste6g00352 AUX_IAA 3.7e-08 CL0072