Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00350 TAAAGAGAGAGTGGTCATTCATTTTTCCAACCGAGTAACGCCGTTTCCATTCTTGCTTCTTTTCTTCCCATAGTTTTCTTTCAGAATTTGGTTTCAGACACACAACACAACGCGCGTTGTTCAACGGAACAAGACCAAACCAAACCAAACACACCACAACCCTTTCTTCTTTTCAGCTTCTGAAGCTCTTCACAATCACTTACGTTGGACGCTGTCGTGTCCCCTCAGTTCTCCGAAGGGATCTCGTTAAAGAGGATTTTCAGATTGCCTCACGAAACGAACCGTTTTGGGTTTCTTTTCTGTTTCAATTCTTTTTGGGCCGTTGACTTGTGTTGGTCTGTTGAAGCATGTTGAGCCGCGCGTCAAATGTTTCGGCCGAAGTGGTTGGCTCCGGAGAGAGTGAAGATGAGCTGTATGGGCAACTATGGAAGGCTTGCGCGGGACCACTCGTGGACGTTCCTCGTGTTGGCCAGAGAGTGTTCTATTTTCCACAAGGGCACATGGAGCAATTAGAGGCTTCAACAAACCAAGAATTGAATCAGAGGATTCCTTTGCTGAAGCTTCCTACAAAGATCCTTTGTCGTGTTGTGAATGTTCATTTACTGGCTGAGCAAGAAACAGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTACAAGTGCTGATCCGTGCACTAATGAGCCTCCGAGGGCGCCTGTTCACTCGTTCTGCAAGGTCTTGACTGCTTCGGATACCAGCACCCATGGTGGCTTCTCAGTTCTCAGGAAACACGCCACTGAATGCCTTCCTCCATTGGATATGTCTCAACCAACACCAACTCAGGAATTGGCTGCGAAGGATCTTCATGGCTATGAATGGCGCTTTAAGCATATATTTAGAGGTAAGGAGATGAGAATTGAGAAGTCAGCCACGCAGACACTTGCTAACGACTGGTTGGAAGGGAACAATGGGGAATTACGTGTGGGAGTAAGACGTCTAGCTCGTCAGGCAAGTAGCATGCCTTCATCAGTGATTTCCAGCCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTCGTAGTATATTATAAGCCAAGGACGAGCCAATTCATCGTTGGTGTGAAAAAGTATTTGGAGGCCATGAACAGCAAGTTCGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACGATAGTTGGAGTGGAAGATATTTCTCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTGCTGCTGTTCCAAGACCTGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTTGCATCTGCTTCTACACCCTCAGTTCAACCTACTATTGTAAAGTCTAAAAGGCCCCGACAGCCCAGCGATGTTCCAGATGTTGGTGAGTATTTATTTTATAGAGTTTAA 1496 0.4619 MLSRASNVSAEVVGSGESEDELYGQLWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSADPCTNEPPRAPVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELAAKDLHGYEWRFKHIFRGKEMRIEKSATQTLANDWLEGNNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVGVKKYLEAMNSKFGVGMRFKMRFEGDDSAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVPRPDRVSPWEIEPFVASASTPSVQPTIVKSKRPRQPSDVPDVGEYLFYRV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00350 382 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 370 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste6g00350 382 Gene3D - 277 352 - -
Pste6g00350 382 SMART B3_2 127 218 IPR003340 GO:0003677
Pste6g00350 382 SUPERFAMILY DNA-binding pseudobarrel domain 117 245 IPR015300 -
Pste6g00350 382 CDD B3_DNA 125 216 IPR003340 GO:0003677
Pste6g00350 382 Gene3D - 124 217 IPR015300 -
Pste6g00350 382 FunFam Auxin response factor 277 350 - -
Pste6g00350 382 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00350 Pste-Chr6 1168957 1172112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00350 16 371 B3 DNA Binding Superfamily AT2G46530 64.130 1.10e-166 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste6g00350 Auxin_resp 6.1e-30 No_clan