Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00349 atgcttggtaagggaggttttggtcctgtatataagggacaattggataacggacaagaaattgctgttaaaagactttcaaaagcatccggacaaggattagaagaatttatgaatgaagtagttgtgatttctaaacttcaacatcgcaatctagtaaaactgcttggttgttgtgtagaacaagatgaacaaatattggtctatgaatttatgccaaataaaagtttggattcgtttctttttggaatagctcgaggaatactttatcttcatagggactcaagactaaggatcatacacagagatcttaaagcaagcaacatcttactagatgatgagatgaatccaaaaatatcagactttggtttagctagaattgttagaggtggtgatgatgatgaagctaacacaaaaagggttgttggaacttatggttatatgccacctgaatatgcaatggagggaattttctcagaaaaatcagatgtttatagctttggagtgttgttactagagattgtaagcgggcgaagaaacactagcttttatagcaacgagcagacacttagtcttgttggatatgcatggaaactatggaatgaaggcaacattatgtctataatagatcctgagatacaagatccaatttttgaaaagagtacatcaagtaaagacctgaacttccacaaagacctgttaggagtaacattgacttctccggcctctccttctgggaaaggtttcacacattttgctttgataacaggcaaaaacaagggtgtttatacatccttcagagacctcaatgaggctaaacaagaccagttttggtgtacatacaaaggtttctactcattggaagaaattgaaatggcagttcgattggaaacaattgatgaggaaaaaataaaaattgccttacaattagagcctcgtgctcaaacacaaacatatgctactgctgcttgcagtatcacacaacaaataaatcccaacatcgttctgggatgtctccattctttgatgatacctcccacagataggttttctgccttgtccccaatactaaacttcgtcataaatgatattcaggcgaaacacatgcagcaggtggctctacaaatcactacttctcctagaagtattcacactcatgatagttcacctactcatgtgataaagttatttactgaggtaaatcctgagatagatactctgaccctgttagagcatgattcactcaaaggattatccctaaataaagacaaagcctaccagtacaatctctggaaagcatacactgaaggatccaactggaacttctccaaacaagattccaagagttttatactattgaaggaaacgtcaaacacaaaattatattggaaaaagacaatgggtaataaatttcacccatttccaatagaggctaacctttctctcgtcaagcattttgaaaaggaaaggttatataaagaaatatatgaagaaactggctgttatggtcagaacactcccgaactgtcctcctttccatctgactgtgacgacactgaagatcagagtctcccagaacaaatggaggaagaaatacaagacttgactacacttgctcgaacaggttgccagtcatggagaaacctacatagcaggtcactagtcaacagggaacgttacattatggtatcagagcagtttgattctaaatcaaactgtggcagatttatggcgactaataggcgtggggcaaacactaatgatgcacttgcagcagctttggaccgaatggccacagttatgcaagcgcagatggatgttattcgtcagatggggcaaaacagaggtggagcaatcacaggagcaattgcacccccaaatgcccagtacgcggggttatctgaatttcgtaaccatgattcaccatcctttcaaggtagcccaaatcctgtcgaggctgaagaatggatccagaagctggagaagatgtttcgatggaacaccgcccgaggtggtttggtaactcaaggagctcctatcacttgggacacattcaaggcggtattcttggaaaaatactttcctcataatgttcgcattcaaaaagaggttgagttccttaacctttgccaaggagagatgattgtagccgagaatgtggttaagtttgagagcttggctaggttttctcgttttttgagatatcatccccaagatgaatggaaagctatcaagtttgagcagggcctaaagccagagttacggagtagtgttggcatcctggaaattagagactatcctatatgtgcatatcctgttaacttaatatgtttgccttggtctggtttggatgtcatacttggtatggattggttgtctgcaaatcgtgttgttataaattgttctgataagattatttatattgttgcacaacccatgaccatttactcctttgtgtcaaatcatgttacctctgttgtctcctgcctcaagtgcttagttgaaggggcccaaggatacatgctcttatttttggctagagtagaggttgacttagatgtggcaactatacctgtagtgtgtaaattccaagatgtttttcctaaaaaggtttctagtttgcctccaaatagagatgtggagttcaacatagaccttatgccaggcagtagtccagtttcagtagcaccttacaggatgtcacctatggagctgagtgaacttaagaaacaattagagaagatgttagaaatgggattcattaggcccagtgtatcaccttggggagtaccaatactcttagtgaagaagaaggaaggaagtatgaggttatgtgtagactataggcgattaaataaggtgactattaagaataagtatcccttgcctaggatagatgaccttttaaatcagttaaggggagcatcgacattctctaagatagatttacgatcagggtatcatcagattagggttaagagtgtagacatccttaaaacagcctttaggacgaggtatggacattttgagtatgtagtggtgccctttggtgtgactaatgctccggcagtcttcatggattacatgaatcgaatctttagacatttcttggatagttttgtggtggtattcatagatgatatcttgatatactcaaagatgccagaagaacataagacacacttaaggataatgttgcagattttgagggatcaatacttgttcaccaagccagaaaagtgtgagttttggcttgatgtggtgaagtttttagggcataccatttccaagaagggtgtagtagctgattctagtaaagttgatgcagtgttagaatgggagcaacctaaaatagtgactgaagtgaagagttttctaggattgacaggttactatagaaggttcatagaggggttctctagactagccttacctcttaccatgctgactaggaaagggaaaccctttgagtggaataataggtgcgaagaaagttttcaggagctcaagaagagattggaaggaagagtagtggcgtatgcatctaggaaacttcagactcatgaagggaattatcgcacccataaccttgagttggcagccgtgttgaatatgagacagaaaaggtggatggagttccttaaggattatgattttgagttgaagtaccacccaggaaaatccaatgtagtggctgatgccctaagtaggaaatcattacatatgtctagtttgatggtgcaagagatgaacttgatagaggagttttgggacctaaatttaagtgtcattaaaagccttaatgatgttcaagatagaatcatagttcctaaggggggaaatcttagagagaaaattctagaagaaggtcataagggtaagttcaccatacatctagggataactaagatgtatcaggatttgaagaagatgtattggtggccagggatgaagaaggatgtggctagttttgtgactagcacagcgtaccaccctcaaactgaccgtcagtcagagaggaccattcaaacccttgaggacatgcttagggcgtgtgtcttacatgaaggagggagttgggagagatttttaccccttatagagtttgcatataacaatagttatcatgctagcataggtgagaagactctgataggaccagatttagtgcaagaaaccacatacaatattaagatgattaaagaaaggatgcacactgctcaaagtagacaaaagaattatgccaacaataggaggaaacctttagaattccgagaaggtgaacatgtattttttagagtcactcctaagactggggtagggaggtcaataaagcccaagcctattcaaatcatcgacaaaagcactaaaactctgaggaacaagataatcccattggtgaaggtgatttggaagggattgactccagaagaggctacatgggaacttgaggatgatgttagccaacgatatttgtatctcttcgattga 4491 0.0 MLGKGGFGPVYKGQLDNGQEIAVKRLSKASGQGLEEFMNEVVVISKLQHRNLVKLLGCCVEQDEQILVYEFMPNKSLDSFLFGIARGILYLHRDSRLRIIHRDLKASNILLDDEMNPKISDFGLARIVRGGDDDEANTKRVVGTYGYMPPEYAMEGIFSEKSDVYSFGVLLLEIVSGRRNTSFYSNEQTLSLVGYAWKLWNEGNIMSIIDPEIQDPIFEKSTSSKDLNFHKDLLGVTLTSPASPSGKGFTHFALITGKNKGVYTSFRDLNEAKQDQFWCTYKGFYSLEEIEMAVRLETIDEEKIKIALQLEPRAQTQTYATAACSITQQINPNIVLGCLHSLMIPPTDRFSALSPILNFVINDIQAKHMQQVALQITTSPRSIHTHDSSPTHVIKLFTEVNPEIDTLTLLEHDSLKGLSLNKDKAYQYNLWKAYTEGSNWNFSKQDSKSFILLKETSNTKLYWKKTMGNKFHPFPIEANLSLVKHFEKERLYKEIYEETGCYGQNTPELSSFPSDCDDTEDQSLPEQMEEEIQDLTTLARTGCQSWRNLHSRSLVNRERYIMVSEQFDSKSNCGRFMATNRRGANTNDALAAALDRMATVMQAQMDVIRQMGQNRGGAITGAIAPPNAQYAGLSEFRNHDSPSFQGSPNPVEAEEWIQKLEKMFRWNTARGGLVTQGAPITWDTFKAVFLEKYFPHNVRIQKEVEFLNLCQGEMIVAENVVKFESLARFSRFLRYHPQDEWKAIKFEQGLKPELRSSVGILEIRDYPICAYPVNLICLPWSGLDVILGMDWLSANRVVINCSDKIIYIVAQPMTIYSFVSNHVTSVVSCLKCLVEGAQGYMLLFLARVEVDLDVATIPVVCKFQDVFPKKVSSLPPNRDVEFNIDLMPGSSPVSVAPYRMSPMELSELKKQLEKMLEMGFIRPSVSPWGVPILLVKKKEGSMRLCVDYRRLNKVTIKNKYPLPRIDDLLNQLRGASTFSKIDLRSGYHQIRVKSVDILKTAFRTRYGHFEYVVVPFGVTNAPAVFMDYMNRIFRHFLDSFVVVFIDDILIYSKMPEEHKTHLRIMLQILRDQYLFTKPEKCEFWLDVVKFLGHTISKKGVVADSSKVDAVLEWEQPKIVTEVKSFLGLTGYYRRFIEGFSRLALPLTMLTRKGKPFEWNNRCEESFQELKKRLEGRVVAYASRKLQTHEGNYRTHNLELAAVLNMRQKRWMEFLKDYDFELKYHPGKSNVVADALSRKSLHMSSLMVQEMNLIEEFWDLNLSVIKSLNDVQDRIIVPKGGNLREKILEEGHKGKFTIHLGITKMYQDLKKMYWWPGMKKDVASFVTSTAYHPQTDRQSERTIQTLEDMLRACVLHEGGSWERFLPLIEFAYNNSYHASIGEKTLIGPDLVQETTYNIKMIKERMHTAQSRQKNYANNRRKPLEFREGEHVFFRVTPKTGVGRSIKPKPIQIIDKSTKTLRNKIIPLVKVIWKGLTPEEATWELEDDVSQRYLYLFD 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00349 1496 SUPERFAMILY Ribonuclease H-like 1325 1383 IPR012337 -
Pste6g00349 1496 Gene3D - 960 1095 IPR043128 -
Pste6g00349 1496 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 880 1020 - -
Pste6g00349 1496 CDD RT_LTR 919 1095 - -
Pste6g00349 1496 Gene3D Acid Proteases 743 822 IPR021109 -
Pste6g00349 1496 Gene3D Transferase(Phosphotransferase) domain 1 71 234 - -
Pste6g00349 1496 Gene3D Phosphorylase Kinase; domain 1 2 70 - -
Pste6g00349 1496 FunFam Os07g0541700 protein 76 144 - -
Pste6g00349 1496 FunFam Transposon Tf2-6 polyprotein-like Protein 1105 1185 - -
Pste6g00349 1496 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 214 - -
Pste6g00349 1496 Pfam Retrotransposon gag protein 653 751 IPR005162 -
Pste6g00349 1496 Pfam Retroviral aspartyl protease 770 808 - -
Pste6g00349 1496 Gene3D - 1104 1240 IPR043128 -
Pste6g00349 1496 Gene3D - 1255 1330 - -
Pste6g00349 1496 SUPERFAMILY Protein kinase-like (PK-like) 1 217 IPR011009 -
Pste6g00349 1496 Pfam Integrase zinc binding domain 1281 1327 IPR041588 -
Pste6g00349 1496 SMART serkin_6 1 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00349 1496 FunFam Uncharacterized protein 8 71 - -
Pste6g00349 1496 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 916 1095 IPR000477 -
Pste6g00349 1496 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 935 1095 IPR000477 -
Pste6g00349 1496 Pfam Protein tyrosine and serine/threonine kinase 2 192 IPR001245 GO:0004672|GO:0006468
Pste6g00349 1496 SUPERFAMILY DNA/RNA polymerases 859 1223 IPR043502 -
Pste6g00349 1496 ProSiteProfiles Protein kinase domain profile. 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00349 1496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00349 Pste-Chr6 1168953 1185087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00349 1 215 Receptor kinase-like Gene Family AT4G11530 62.393 8.21e-88 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pste6g00349 PK_Tyr_Ser-Thr 4.7e-40 CL0016