Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00326 GTGAAGAAAGAATCTGTGTTGTTCACTCTGAGCCACACCACTGTAGCGGGAGAGAAACTACGAAAGAACCAAACAAGGAATTTGAGTGTGCGTGCTGCAAAACCCAAAAAAAAGAAAAAGAAAAAAAAAACAACCACACTCCTCAATTTTCTCTCATTAAAATCCCACTTCATTCATTCACGGCTTCATTTTGAGCATTTGGGTGGTTTTGTGGTTTCTTCTATGGCTGAGGGTTTTGAGGCCTACCATGTTCCGCAGCAAAGCAGAAGAGATAAGCTAAGAGTTGTGGTGACACAGAACCAACATGGTCTCGTTGAACCCTCCACTTTGCTTCCTTTGTACGACCCTTCTTCGTTTATATCTTCTGATTTGTTAACGAGCTTTCACAATAGCCAAAAACACAACTTGGGTTGTGGGGTGAAGGAAGAACGTGCGAATTTGATGATGGGTTTTGGTGGTGGCGGTGGTGGTGGAGGAGTTATGAATAATGGCTCTTCTTCTTCTTCTTCGTGTTGTTCTTCTAACTCCTCTTTGGTTTCTTACTTGGATCCTCAATCGTCTTTGCCTTTGAACCAAGCTACAATTCAGGTTATTAACAACAGCAACAACAATAGCAGCAGTGGCAACAACAACAACAACAACATGTTTCTCTACCAAGCGCAGAACCTGAGAGAGTTTGATCAGGGTTATAATAATAATAACAATAATAATCATAATAATAGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTGTCGTCACACAACAACGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTATGGTGATAAGGTTGGTGGGGTTGGTGGTGGTGGTGGATGTGTGATTTATGGTGGTTCAGGTTTGAGTGAAGTTTCGAGGTGCACAGTGCCAATGGGGCCATTTACTGGTTATGCTTCTATATTGAAGGGATCGAGGTTCTTGAAGCCAGCGCAGCAATTATTGGAAGAGTTGTGTGATGTTGGTGGAGTTTGTGTTGAGAAGATGGTGGCTGATGCATCTTTGATGGAGCCTATTCCTCCTCCTCCTGAGAGCTCAAGTGAAGATCCACTAGGGGATCATGGGAGTGGTCATGGTCGCAAAAAGTCAAGGCTGTTAACTATGCTTGATGAGGTATACAGGAGGTACAGGCAATACTATCAGCAGATGCATGCAGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCCTATGCAAGTTTGGCTATAAAAGCCATGTCCAAGCATTTTAGATGCTTGAAGAATGCAATCACTGATCAGCTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTCCAAGGTTTGGAAACAGTGATAGAGGCCCTTACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTTCCTGAGCGTGCTGTGACTGTTCTGAGAGCATGGTTGTTTGAGCATTTTCTGCATCCTTATCCTACTGATACCGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTATGGAAACCAATGGTGGAAGAAATACACATGCTAGAAACAAGGCAAGCTCAAAAGAGTTCACTGAAGGAAGAACATTGCAGGAACAAGTCAAGTGATCATTTGCCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTACCTCCACAGACAAGTTTCAGGATGCTCCTTACAAGCGCACAATAAACGAACTTCCTAACATACCAGTTAGGACTCAGGAGCAACTGAATCTTCCCTGCACAAGCAATCAGCCAGGTGGTGTTGGAGTGAGCATGGGACGTAGTGCAAACAATAATGTGTCACTCACACTAGGCCTTTACCAAAACCATGGGATTGGTTTGGCTGAACCTTTCCCCTTGAATGCAGCACAGCGATTTGGCGTTGCTCTTGAAACTAACAATGAAGGCTATGTTATGAGTGGCTATGAGTCACAAAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTTTTGCATGACTTTGTAGGCTGAAGGTCTTGAATGTCTAATAACTTACCTGGAGTTTCAATTTGATTGGGGTGATGTATACTAACCATGTTTCTGTTGTGCTTTCATGAATTATCCAAAGTTAGAAGAGGGAGTGGAATGTTGCACTTTATGGTGATATTGGCAATGATGAATGAACCTTCATGGGATTAACTGGTCTTGTTATTGAGCTCACTTGTTGTAAAATTGTTGTGTAAATTCATTGAAGGGTGGAATGAGTGGAATTGATATTGTGTCATAGGCTGATCCAATTCACCCTTGTGTTGTTGACCTTTAATTACTGGGGGTAAATCCAAATATTCTGGCCATTTCAGCTGTTTGTAAGTTTTAACTTTTTATATTATTGTCATCCAAACATAGTAAATGGATTTCAATTTGTAATACTTAAAATCTTGTACAACATGATTGTACAAGTCCTCTTGTTAGCTACTATCTTCTGGTCTATATGCTGC 2561 0.419 VKKESVLFTLSHTTVAGEKLRKNQTRNLSVRAAKPKKKKKKKKTTTLLNFLSLKSHFIHSRLHFEHLGGFVVSSMAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSDLLTSFHNSQKHNLGCGVKEERANLMMGFGGGGGGGGVMNNGSSSSSSCCSSNSSLVSYLDPQSSLPLNQATIQVINNSNNNSSSGNNNNNNMFLYQAQNLREFDQGYNNNNNNNHNNSEIMVFKPEPLSLSLSSHNNGVNLQRYGSVVYGDKVGGVGGGGGCVIYGGSGLSEVSRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCVEKMVADASLMEPIPPPPESSSEDPLGDHGSGHGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNRKDESPRFGNSDRGPYSQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSSLKEEHCRNKSSDHLPSDNSIVSENPSTSTDKFQDAPYKRTINELPNIPVRTQEQLNLPCTSNQPGGVGVSMGRSANNNVSLTLGLYQNHGIGLAEPFPLNAAQRFGVALETNNEGYVMSGYESQNRHFGRDVIGGQLLHDFVG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00326 697 MobiDBLite consensus disorder prediction 549 566 - -
Pste6g00326 697 SMART prehox3 307 434 IPR006563 -
Pste6g00326 697 Gene3D - 480 542 - -
Pste6g00326 697 FunFam BEL1-like homeodomain protein 9 480 542 - -
Pste6g00326 697 Pfam Associated with HOX 312 433 IPR006563 -
Pste6g00326 697 SUPERFAMILY Homeodomain-like 479 544 IPR009057 -
Pste6g00326 697 MobiDBLite consensus disorder prediction 449 470 - -
Pste6g00326 697 MobiDBLite consensus disorder prediction 347 372 - -
Pste6g00326 697 MobiDBLite consensus disorder prediction 549 587 - -
Pste6g00326 697 CDD homeodomain 477 538 IPR001356 GO:0003677
Pste6g00326 697 ProSiteProfiles 'Homeobox' domain profile. 474 537 IPR001356 GO:0003677
Pste6g00326 697 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 208 561 - -
Pste6g00326 697 MobiDBLite consensus disorder prediction 567 587 - -
Pste6g00326 697 Pfam Homeobox KN domain 494 533 IPR008422 GO:0003677|GO:0006355
Pste6g00326 697 SMART HOX_1 477 541 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00326 Pste-Chr6 1078762 1086829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00326 242 697 Homeobox Transcription Factor Family AT5G02030 51.546 1.26e-125 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pste6g00326 POX 1.1e-36 No_clan