Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00316 ATGAGTAAAGCTGGGGTCATGGTAGAGTTCAAAAACGGTGTCGTTATAGGCAAAGAGAAAGACCATGCAACAACGACAAAGGACAAGGAAGTGGCAGGTGTCGTTTTGTTCGGGAAATACAAGCTGGTCAAGTTACTAGGAGTTGGCGCGTCTGCCAAGGTCTACCACGCGCGGAACGTGAACACTTCCCAGAGTGTGGCGTTGAAGGCCGTGAGCAAGCGCAACGTAGAGAAAAACGGTTACGCGGCGCACGTCGAGCGCGAGGTCGCTATCATGCGCCGCCTGCGCCACCCTTACACCGTGCAACTCTACGAGGTCCTCGCCACGAGGACGAAAATCTACTTCGTGATGGAATTCGTCGCGTGTGGCGAACTCTTTGACGTGGTCGCCGGCGAAGGCCCTCTCACGGAAGATGTCAGTCGCAAGTATTTCCGGCAACTGGTGTCGGCCGTGAGATACTGCCACGCGCGCGGCGTGTACCACCGCGACTTGAAACTGGACAACCTTCTTGTTGATGAGAACACGAACCTTAAAGTCTCCGACTTTGGATTGGGCGCGTTGAGGAGCCAGGTCGGACACGACGGCATGCTGCATACAGTGTGTGGGACCCCTGCTTACGTGGCGCCAGAGATTCTCTCGAGGAAAGGGTACGACGGTGCCAGCGCGGACGTGTGGTCATGCGGCGTCGTTTTGTTCGCCCTCAATGCTGGGTACTTGCCCTTCAATGATTACAATGTTACTGTTCTGTATAGGAAAATCTACAGGGCACAGTTTAGGTTTCCGAGGTGGATGTCAATAGAACTCAAGAATCTCATAACGAGGTTGTTGGATAGGAATCCCGAGACGAGAATCACTTTGGATGAGGTCACGCGGGACGCGTGGTTCATTCGGGGCGGGTACACCGATAGTTTGGTCCGCTTGACCCGACCCGATGAATGGATAGACGACCGGGTCGTGACCACCACGTTGAATGCGTTTGACTTGATTTCTTTCTCGCCCGGGGTTGACATGTCGGGTTTGTTTACCGACCCGGAGTATTCGGATTCGACGGAGCGGTTCGTTACGGCTGAGATGCCTGAGAATGTGACGGTAAAGGTGAGAGAGGAAGCGGTGACAGAAAACGTGACGGTGATAAAAGATGAGAGTGGTTGTGGGGGAGTGAGGGTTGAGGGGTTGGATGGGACTTTTGTGATTGTGGTTGAGTTTTACCGGTTAACGGATGAGCTGGTTATTGTTGAGGTGAAGAGGAGACAGAGGAGAGACGGAAGTGGGGAACGGTTTTGGAGCGATAAGTTGGGGCCAATGCTTCATGCATTGGCTAATTACCCGGTCACTCGGTGA 1341 0.5362 MSKAGVMVEFKNGVVIGKEKDHATTTKDKEVAGVVLFGKYKLVKLLGVGASAKVYHARNVNTSQSVALKAVSKRNVEKNGYAAHVEREVAIMRRLRHPYTVQLYEVLATRTKIYFVMEFVACGELFDVVAGEGPLTEDVSRKYFRQLVSAVRYCHARGVYHRDLKLDNLLVDENTNLKVSDFGLGALRSQVGHDGMLHTVCGTPAYVAPEILSRKGYDGASADVWSCGVVLFALNAGYLPFNDYNVTVLYRKIYRAQFRFPRWMSIELKNLITRLLDRNPETRITLDEVTRDAWFIRGGYTDSLVRLTRPDEWIDDRVVTTTLNAFDLISFSPGVDMSGLFTDPEYSDSTERFVTAEMPENVTVKVREEAVTENVTVIKDESGCGGVRVEGLDGTFVIVVEFYRLTDELVIVEVKRRQRRDGSGERFWSDKLGPMLHALANYPVTR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00316 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 33 416 - -
Pste6g00316 446 Pfam NAF domain 321 378 IPR004041 GO:0007165
Pste6g00316 446 Gene3D Transferase(Phosphotransferase) domain 1 33 322 - -
Pste6g00316 446 ProSiteProfiles Protein kinase domain profile. 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00316 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Pste6g00316 446 FunFam CAMK family protein kinase 35 307 - -
Pste6g00316 446 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Pste6g00316 446 CDD CIPK_C 324 436 - -
Pste6g00316 446 SMART serkin_6 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00316 446 FunFam Aurora kinase A 34 123 - -
Pste6g00316 446 SUPERFAMILY Protein kinase-like (PK-like) 36 333 IPR011009 -
Pste6g00316 446 Gene3D Kinase associated domain 1, KA1 323 441 - -
Pste6g00316 446 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Pste6g00316 446 Pfam Protein kinase domain 40 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00316 Pste-Chr6 1060149 1061489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00316 35 432 CBL-interacting serine-threonine protein kinases AT2G30360 54.187 1.19e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pste6g00316 Pkinase 2.2e-67 CL0016