Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00313 GTTTGATCTTGGCAATTCACCATTAAACCATGTCAAATTATTATTAGAGTTTCCTTGCTTGTGATTCTTTATATTACTCAGTTTTCTTTTATCACTTTATTTTCTCAGGATTACCGTCTTTGAATTTCAATTGTATAAAAGAAATTTTCTCACATGCAGTGTATGAAATAGAACTGAAATTGCTAGCCAGATCTGGTATTCCTGGTGGTCTCTATGTAATTTCTTCAAAATGTTTGACTCTGGTTACAAATCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTGAGGTTGGATGATCTGGATTCAAATTGTTCAATGCCATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTACCTATTCCTCTTCCTGGTCGGGGAAGAAAAAGAGCATCAAAGTCGTTTAGGCTAGGAGTGAAGAAGAGTTCAGATGGATTAAAGACATTTGGAAGATCACTGAGGAGTGGAGTGACAACTTGGGGAGTGTTCCCAGAAGATCTTAAAGTGTCAGAGAAAAAAGTATTTGACCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCCTTCTTTCTGTAGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAACAAGCTAGCAGGTTTTACTGTCACATTGAGAACAATATGCGATGTCATTTATCTCCTCCGCATAAGTTTCCAATTCCGCACTGCTTACATTGCACCTTCATCTCGGGTATTTGGTCGAGGTGAACTTGTCATAGATCCGACGGAGATTGCCAAGAGATATTTACAACGTTACTTCATTGTTGACTTCATTTCTGTGCTGCCTATGCCACAGATTGTAGTGTGGAAATATCTTTACAGAACAGGACATGTAGAGGTATTGGAAACAAAAACGGCACTGTTGAGAATTGTGATCCTGCAATATTTTCCGAGATTTGTGCGCTTTTTACCTTTAGTTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGGTTGCTAGTCATATTACTGGCTCTGTCTGGTACTTACTAGCCATTGAACGTAATGACACTTGCTGGAAGGATGCTTGTAAAGAATTTGAAGGGTGCAATACACGTTTCTTGTACTGTGGGAATTCGAACAAGCATATGTTAGGATATGATAGTTGGAGAAATGTCAGCGCGACTGTTCTGAAAAGTCGTTGCTTTATTGAGGATGATAATTCAGAATTTAACTATGGAATCTTCTCTCAAGCTATACAGTCTGATATTGTTGCTTCGTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCCCTTCTGATTGGAAACATGCAGAGCTAAGAGAGAGAGTGAGACGATATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTGAGGAGGGATATCAAACGACATCTTTGTTTGAATTTAGTGAGAAGGGTTCCTCTCTTTGCAAACATGGATGAGCGCTTGCTTGATGCTATATGTGAGCGATTGAAGCCCAGTTTATATACAGAGGGCACTTACATAGTGAGGGAAGGGGACCCAGTCAATGAGATGCACTTCATTATACGTGGGCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTATTCTAAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACATGGGCATTAGACCAAAAATCTGCTGCGAATTTGCCATCATCAACGAGGACAGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCTGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATTCACAGCAGACAGGTTCAACATACCTTCCGTTTCTATTCTCAGCAGTGGAGAACGTGGGCAGCCATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGAAAGATTGCAGGACAACGCAGAAAGGAGGAAGAAGAATTTTGTGACTCTGATTACGAAAACTCTGACGATTCAGCCAAGGCTTTGGTCAGGCGTAACGATACTTCTTTCTCCTCTTCTAGGCTTGGACTTGGTACAACCGTCTATGCTTCTCGCTTTGCTGCTAATACACTTCGAGCTCACAGGCTTCGTGGTTCAAGTTCAAGGGACTTGATCAAATTTCAAAAGCCCCCGGAACCTGACTTCGCTGATCTTCATGACAACCCATCCTCCTACCCTTCCTAG 2356 0.4126 MFDSGYKSQYIGGQKEKFVRLDDLDSNCSMPSSSSGMKKLRFNLDSLPIPLPGRGRKRASKSFRLGVKKSSDGLKTFGRSLRSGVTTWGVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCLLSVACDPFFFYLPYFNHKSFCLAIDNKLAGFTVTLRTICDVIYLLRISFQFRTAYIAPSSRVFGRGELVIDPTEIAKRYLQRYFIVDFISVLPMPQIVVWKYLYRTGHVEVLETKTALLRIVILQYFPRFVRFLPLVSEVKKTAGVFSENALLGAMYYLIWYMVASHITGSVWYLLAIERNDTCWKDACKEFEGCNTRFLYCGNSNKHMLGYDSWRNVSATVLKSRCFIEDDNSEFNYGIFSQAIQSDIVASYTWSGASNQYLPWRGYVFHSNSYYGAYPFCPSDWKHAELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGILKEADFCGEELLTWALDQKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAGQRRKEEEEFCDSDYENSDDSAKALVRRNDTSFSSSRLGLGTTVYASRFAANTLRAHRLRGSSSRDLIKFQKPPEPDFADLHDNPSSYPS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00313 708 MobiDBLite consensus disorder prediction 683 708 - -
Pste6g00313 708 SUPERFAMILY cAMP-binding domain-like 411 582 IPR018490 -
Pste6g00313 708 Pfam Cyclic nucleotide-binding domain 483 572 IPR000595 -
Pste6g00313 708 Pfam Ion transport protein 112 366 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pste6g00313 708 SMART cnmp_10 462 593 IPR000595 -
Pste6g00313 708 SUPERFAMILY Voltage-gated potassium channels 105 303 - -
Pste6g00313 708 CDD CAP_ED 462 593 IPR000595 -
Pste6g00313 708 Gene3D Helix hairpin bin 410 453 - -
Pste6g00313 708 MobiDBLite consensus disorder prediction 683 697 - -
Pste6g00313 708 ProSiteProfiles cAMP/cGMP binding motif profile. 462 592 IPR000595 -
Pste6g00313 708 FunFam Cyclic nucleotide-gated ion channel 1 460 578 - -
Pste6g00313 708 Gene3D Jelly Rolls 460 580 IPR014710 -
Pste6g00313 708 ProSiteProfiles IQ motif profile. 598 627 IPR000048 GO:0005515
Pste6g00313 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 411 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00313 Pste-Chr6 1051762 1055656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00313 6 696 Ion Channels AT1G15990 59.549 0.0 829