Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00311 ATGGCTATTTCTCCTGAAACGTTCACAACCCGAAAACGACGATCGTTTATGTCTCCCAAGGTAAACGACCTTAGTCTCCTCTACTCGCTGCTTCAATTAACGGATCAGATAAGTTCGCTGAACCTTACAAACGCCGCGAGCTTTCTCTTGAACCGTGTTTCCTCTTCCACCATCCGCAAAACGCAGCTTCTTGGTGTCGTTTTCGAGGAGCTGCTTCGTGTTCCCAATTTGAATCCCAATTCAGTTTTTTTCCTGTGTCTCGAGGAAATGTACATCCTTCTGCACAAGATTAAAGCTCTAATCGAAGATTTCTCCAGCGGAAGCAAGTTCAGTTTGCTCATGCAAATCGAAACCGTCGCCGATAACTTCCACAGGCTCATCGGAGAACTCTCCACGCTCCTCGACGTGTTCCCTGTCAAACAACTGGACCTAAACGACGACGTTAGGGAACTCGTTGTCCTCATCAGAAAACAGTGCTCAGAATCGAAGCCGTTCATCGGAGATGAACAGATCAAACTCCGCCACGACGTCGTTACCGTCCTCGACCGAATCAAGAACGAGATCGTCCCCGAGCAAGCGCTTCTCTCTTCAATTTTCGAGAAGCTCGAGATTCGCGACTCGTCGAGCTGCAGAGCGGAGATTGAGAGCTTGGAGGAGGAGATTCACAACCGGCACGAAGAACAATCGAAAACGGATCTCGTCGCGTTGATCGGTTTGGTCCGGTTCGCGAAGTGCGTCCTCTTCGGCGCGTCAACGCCGTCGCAGAGAACAGTCACTCTGCGGCGGAACCAGTCGTCGGAGCTGGCGATTCCGTCGGATTACCGGTGTCCGATAAGCCTGGAGCTCATGCGCGATCCCGTGGTGGCGGCGACGGGACAGACGTACGAACGGGTATCGATCAAATTCTGGATGGATTCAGGACACAACACGTGTCCCAAAACGGGTCAAACACTATCTCACACCGACTTAATCCCCAATCGCGTGCTGCGGAACATGATAGCAGCGTGGTGCCGCGAGCAGAAAATCCCCTTCGAAGCAGAAGCTGTTACGGGGAAATTTCACGGCGGAGTGACAAACAAAGCAGCAATGGAAGCCACGCGAATGACGGTGTCGTTTTTGGTGAACAAGCTAAAGGGGAAGGATAACGTTAATTTATCCGTTGAAGACACAAACGGCGTCGTTTACGAGCTTCGGGTGCTGGCGAAGACAGACTCGGATAGCCGAGCCTGTATAGCGGAAGCGGGGGCGATTCCGCTTTTGGTAGGGTTTTTGGACGTTGGTTCGGGGAATTTGAATCCGAGCCTGCAGGTTAACGCCGTGACGACCATTTTGAATCTGTCTATATTGGAAGCGAATAAGACGAGGATAATGGAGACAGAAGGCGCGTTAAACGGCGTGGCGGAGGTTTTGATTTCGGGTGCCACGTGGGAGGCGAAGGCGAACGCGGCAGCGACGGTGTTTAGTTTGTCGGGTGTGCCGGCGCACAGGAAGAGGTTGGGGAAGAAGAAAAGTGTAGTGAGTGGGTTGGTTGAGTTGGCACGGTGTGGGCCCGAGGGGGCGCGGACGGACGCGCTGGCGGCGATACTCAACCTCGCGGCGGATAGGGACACCGTGGCGAGGCTCGTGGAGGGGGGCGCGGTCCACATGGCGGCGGAGGTCATGGCGGCGATGCCCGAGGAGGGGGTCACGATTCTGGAGGCGGTGGTCAAGAGGGGTGGGTTGATGGCCGTTGCGGCGGCGTATGCCGGGATTAAGAGGCTCGGGGCGGTGCTCAGGGAAGGGTCGGAGAGGGCCCGGGAGAGCGCGGCGGCGACGCTGGTCACAATGTGCCGGAAAGGAGGGTCGGAGGTTGTGGCGGAGCTGGCGGCGCTTCCCGGCGTGGAGAGGGTCATTTGGGAGCTCATGGCGGTGGGGAGTGTGAGGGGGCGCCGAAAGGCTGCCACTCTGTTGAGGATTTTGCGGCGGTGGGCAGCGGGACTCGATGACCGAGATAATGAAGGGCTCTCGACGAGTACCATGGTCACTTCCTCAACTACTGTGGTTGTTCCAACTTCCACCACTTCGATAGCACAGTAA 2076 0.5588 MAISPETFTTRKRRSFMSPKVNDLSLLYSLLQLTDQISSLNLTNAASFLLNRVSSSTIRKTQLLGVVFEELLRVPNLNPNSVFFLCLEEMYILLHKIKALIEDFSSGSKFSLLMQIETVADNFHRLIGELSTLLDVFPVKQLDLNDDVRELVVLIRKQCSESKPFIGDEQIKLRHDVVTVLDRIKNEIVPEQALLSSIFEKLEIRDSSSCRAEIESLEEEIHNRHEEQSKTDLVALIGLVRFAKCVLFGASTPSQRTVTLRRNQSSELAIPSDYRCPISLELMRDPVVAATGQTYERVSIKFWMDSGHNTCPKTGQTLSHTDLIPNRVLRNMIAAWCREQKIPFEAEAVTGKFHGGVTNKAAMEATRMTVSFLVNKLKGKDNVNLSVEDTNGVVYELRVLAKTDSDSRACIAEAGAIPLLVGFLDVGSGNLNPSLQVNAVTTILNLSILEANKTRIMETEGALNGVAEVLISGATWEAKANAAATVFSLSGVPAHRKRLGKKKSVVSGLVELARCGPEGARTDALAAILNLAADRDTVARLVEGGAVHMAAEVMAAMPEEGVTILEAVVKRGGLMAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAELAALPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDDRDNEGLSTSTMVTSSTTVVVPTSTTSIAQ 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00311 691 Pfam U-box domain 270 341 IPR003613 GO:0004842|GO:0016567
Pste6g00311 691 SUPERFAMILY ARM repeat 386 653 IPR016024 -
Pste6g00311 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 461 IPR000225 GO:0005515
Pste6g00311 691 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Pste6g00311 691 PANTHER U BOX DOMAIN-CONTAINING 74 654 - -
Pste6g00311 691 SMART arm_5 404 448 IPR000225 GO:0005515
Pste6g00311 691 CDD RING-Ubox_PUB 271 323 IPR045210 -
Pste6g00311 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 348 IPR013083 -
Pste6g00311 691 Gene3D - 355 658 IPR011989 -
Pste6g00311 691 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Pste6g00311 691 FunFam RING-type E3 ubiquitin transferase 265 343 - -
Pste6g00311 691 Pfam Armadillo/beta-catenin-like repeat 405 447 IPR000225 GO:0005515
Pste6g00311 691 SUPERFAMILY RING/U-box 266 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00311 Pste-Chr6 1039220 1041295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00311 11 686 U-box Gene Family AT5G01830 54.161 0.0 682