LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00278	GAAACATCACCCGTCACCGAACACTTGACATTTTCGGATACACTTTGAACCCTCTCTCGTCGGAAGGAACATGTCTTCTTCGGAGTTCCAAGTTGGGGGGTAGAGAGAGAAACTGAAAACGAAAACGTCTCCGTTTTCGAGAGAGAAAACTGAACTCAAATTTCCCACTTTTGGTCACTTGGGTTGTTTGAAAAGAGCTTTGAAACATAAACTTGCAGGCCATTTTGTTGGGTGTGTGCCAATTTTCTCTGAAAATTTTGTTAGCGTCTGTTGTAAGTTACTTTTTTTTTGGAAAAAAAAATACATTTTTTTTTAATCTTTTCTTTGATGGGTTTCTTTGGATGAACTTCAAACGGTGGTCAGCTTCTCAATGAAGCAAAGGTTTGAAAGAGGGGGAACATGCTACATGGGTGAACAAGAAATATGAAAAATATTTGTTTTTTAATATTTTTTTAAGGTGGAGTGGCAGTGCATGATTGGTTTCGAATGAAGGAGATTGTTAGCTGTTAGAAGAAATTTTTGTTTATTTTCTTTTCCGTTTACTTTGGAGGTGTTGTTTATGTTGGAAGGAAGATTCAGGGGAGGTGGGTTTGTTGTTGGATTTTAAGAGTTTTTCTTTCTTTTTCTAAGTGGTGGTTAGTATTGAAATGAGGAACTTGGTTATAGTTTAAGGTTGCAGCATGAGTTGCAGAGAAAGGAGCAAAGGGAAAAGAGAAAAGCAGGAATATGAGAACAGCTCTGTGGGATTGGAATCAAAATCTGTGAAGCACAACAATGGTTCAATAGAAGAGGAGCAGCTAACGATTGATGAAAATCTTCTGATTGACCCCAAACTATTGTTTATTGGGACAAAAATTGGCGAGGGAGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCGGATTGTTGCAATTAAAGTACTGCATCGTGGGGGCACTTTGGAAGAAAGAGTTTCCCTTGAGAATCGATTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAAAATCTTGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTGATTGTTACAGAGATGTTACCTGGGTTGTCACTGCGAAAATATCTGATCACTATACGCCCTAATCAGTTAGAACTTTATGTGGCTATAAATTTTGCCCTTGATATTGCTCGAGCCATGGATTGGCTTCATGCCAATGGGATTATACATAGAGATCTGAAACCTGACAATCTGTTGCTTACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCGGAAACTGGAACTTACCGTTGGATGGCACCTGAGTTGTACAGTACTGTGACATTGCGTCAAGGGGAGAAAAAGCATTATAACAATAAGGTTGATGTCTACAGCTTTGGGATTGTTTTGTGGGAGCTACTTACAAACCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGAAGACATATCTCCTGATCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCTTGCTTCATGAGTTTCTCTTCACACTCAAACAACCATCTCCTTCTTTGCCGCTAGAACCTGAGGCTATAACAAGTAATGGCACCATAACTGACTTTTCTACCCGAAATAAAGCAAAGTTTTCTTTCATTCGCCACTTGTTTTCTTCAAAGAGGACCAAAAGCTAACCGTAATGAGTTGTAAATTTTTAAAAATTTCCTTTTGCTGTAAATAAAAGAGTTCTCATAGCAGCTTTTACAAGTAATCTTCTAAGGAGTAGAATGATGTTGATAAACTTTTTGAAAGAGTAGGGAAAAAGAAAAGGGTTGTTTATATTATGCAGTTGATCTTGTTATATAAGAACAAGTTGATTTAGATATTTGCCTCCTTTTCAAGACATGTTTTGAATTATAGTGAAGCAATCTTTATACAAAA	2028	0.3826	MSCRERSKGKREKQEYENSSVGLESKSVKHNNGSIEEEQLTIDENLLIDPKLLFIGTKIGEGAHGRVYEGRYRDRIVAIKVLHRGGTLEERVSLENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRKYLITIRPNQLELYVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPEDISPDLAFIIQSCWVEDPNMRPSFSQIIRLLHEFLFTLKQPSPSLPLEPEAITSNGTITDFSTRNKAKFSFIRHLFSSKRTKS	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00278	366	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Pste6g00278	366	ProSiteProfiles	Protein kinase domain profile.	53	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g00278	366	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	48	322	-	-
	Pste6g00278	366	Gene3D	Transferase(Phosphotransferase) domain 1	137	342	-	-
	Pste6g00278	366	ProSitePatterns	Protein kinases ATP-binding region signature.	59	80	IPR017441	GO:0005524
	Pste6g00278	366	FunFam	Kinase suppressor of Ras 1	42	132	-	-
	Pste6g00278	366	Gene3D	Phosphorylase Kinase; domain 1	41	132	-	-
	Pste6g00278	366	MobiDBLite	consensus disorder prediction	1	19	-	-
	Pste6g00278	366	Pfam	Protein tyrosine and serine/threonine kinase	55	314	IPR001245	GO:0004672\|GO:0006468
	Pste6g00278	366	MobiDBLite	consensus disorder prediction	1	32	-	-
	Pste6g00278	366	CDD	STKc_MAP3K-like	59	314	-	-
	Pste6g00278	366	SMART	serkin_6	53	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g00278	366	SUPERFAMILY	Protein kinase-like (PK-like)	49	339	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00278	Pste-Chr6	930631	935899	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00278	41	363	MAP Kinase Kinase Kinase	AT5G01850	73.851	0.0	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Pste6g00278		PK_Tyr_Ser-Thr	2.3e-60	CL0016