Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00271 TTGTATTAATTAATGCCTTGGTTATTGGATGACTTGGTCGTATTTATATAACTATGGGGGCCTTCACTCTTGAACTGTAATGCGTGTGCAGTGCAGTGGTTGTGACTTGTGATGGCGAAGAAATCGCAGCAGAAAAGCCTCAACAACAATAAAAATACCGGTGGGAAGCGAACACGCAAAAGCGTCCCAAGAGACTCACCTCCACAACGAAGCTCTATCTACAGAGGCGTCACAAGACATCGTTGGACTGGTCGATACGAGGCTCATTTGTGGGATAAGAACTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGGGGCTTATGATGATGAAGAAGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATCCTCAATTTTCCATTATCAAATTATGAGGAGAAGCTCAAGGAGATGGAGGGTCAGTCAAAAGAAGAATATATTGGATCCTTGAGAAGAAAAAGCAGTGGGTTCTCTCGAGGAGTCTCCAAATACAGAGGAGTGGCAAGACACCACCATAACGGAAGATGGGAAGCTCGGATCGGCAGGGTCTTTGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAGGCAGCCGCGGCATATGACATGGCAGCCATAGAATACAGAGGACTTAACGCCGTTACAAACTTTGACCTGAGCCGTTATGTGAATTGGCCACCGCGTCCTAAAACGGAAGAAAATGTTGGGAGCAATGAGAACAATGAGTCAAACCCTGAGGTTGAAGTTGAAGTTGAAGTTGAAGTAGAGCTAGGTTTGGGTACTACAGCAGAGGATGAGGGTGTTGGTGTTGCACAATCTACTGCAGAGTCAAATCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACCATTTTTGAAAGTCAAAGTCAAGATTCGGGCATCTACACTGAAAATGATCATGATATCATTTTTGGTGACTTGGGCTCCTTTGGTTCACCAATTTTTCATTACGAGCTCGATGTTTAGAAGGCCCACTTCTCTTTCCAACACCAAAAACATTTTACAATTCTTTTAGGGTAACATACCAGCGGGGAAAGGGATTCCTTCATTTTTATTTGCATACAAGGGCCTCATTTAACAATTTACTTTTATTATGTATGTCTCCACCATCATCCGTACA 1177 0.4393 MAKKSQQKSLNNNKNTGGKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGLNAVTNFDLSRYVNWPPRPKTEENVGSNENNESNPEVEVEVEVEVELGLGTTAEDEGVGVAQSTAESNPSRRTFPEDIQTIFESQSQDSGIYTENDHDIIFGDLGSFGSPIFHYELDV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00271 303 Gene3D AP2/ERF domain 134 195 IPR036955 GO:0003700|GO:0006355
Pste6g00271 303 Gene3D AP2/ERF domain 36 101 IPR036955 GO:0003700|GO:0006355
Pste6g00271 303 MobiDBLite consensus disorder prediction 242 258 - -
Pste6g00271 303 SMART rav1_2 36 105 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 FunFam AP2-like ethylene-responsive transcription factor 35 101 - -
Pste6g00271 303 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 217 - -
Pste6g00271 303 MobiDBLite consensus disorder prediction 237 258 - -
Pste6g00271 303 CDD AP2 134 195 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 FunFam AP2-like ethylene-responsive transcription factor 134 195 - -
Pste6g00271 303 MobiDBLite consensus disorder prediction 1 19 - -
Pste6g00271 303 MobiDBLite consensus disorder prediction 202 222 - -
Pste6g00271 303 ProSiteProfiles AP2/ERF domain profile. 36 99 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 Pfam AP2 domain 36 91 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 Pfam AP2 domain 134 185 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 PRINTS Ethylene responsive element binding protein signature 175 195 IPR001471 GO:0003700|GO:0006355
Pste6g00271 303 SUPERFAMILY DNA-binding domain 134 195 IPR016177 GO:0003677
Pste6g00271 303 SUPERFAMILY DNA-binding domain 35 101 IPR016177 GO:0003677
Pste6g00271 303 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00271 Pste-Chr6 916043 919609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00271 32 197 AP2-EREBP Transcription Factor Family AT5G57390 72.781 1.91e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pste6g00271 AP2 1.7e-09 CL0081