Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00270 GTTCCAAGTGGTATCTATGGCCAAGTAGCCGGCGTTAGTGGCTGGAAGGCTGCACATGCCACATTCTATGGTGGAGGAGATGCTTCAGGGACAATGGGGGGAGCATGCGGATACGGAAACCTGTATGAGCAAGGATATGGAGTGGCAAACACAGCCTTGAGCAGTGCCCTATTCAACAAAGGGTTTTCATGTGGTGCCTGTTTTCAAATTGCTTGCTACAATGATCCAAAGTGGTGCATACGTGGAGCTGAACCCATCACCGTCACAGCAACTAACTTCTGTCCCTCCAACACCACTGCCAACGGTCCTGGTTGGTGCAATCCACCGTTGCTTCATTTTGATCTCTCGCAGCCAATGTTCACCAAGATTGCCCTCTACCGTGCTGGAATCGTTCCTGTCCTATTCAGAAGGGTGAGATGTTATAAGAAGGGAGGAATAAGGTTCACCATGAATGGAAACCCATACTTCAACTTGGTGTTGGTGTACAATGTGGGAGGTGCAGGAGATGTGAAAGCAGTGTTAATAAAAGGGTCTTCAAGTGGGTGGCTACCAATGACCAAAAACTGGGGCCAAAATTGGCAGAGCAACACACACCTCGTTGGCCAGTCCCTCTCTTTCAAGGTCACAACCAGCGATGGTCGATCTGTGACCAGTTTCAGTGTGGTACCTGCTCATTGGAGATTTGGACAAACCTTCCAAGGTCGTCAGTTT 711 0.4923 VPSGIYGQVAGVSGWKAAHATFYGGGDASGTMGGACGYGNLYEQGYGVANTALSSALFNKGFSCGACFQIACYNDPKWCIRGAEPITVTATNFCPSNTTANGPGWCNPPLLHFDLSQPMFTKIALYRAGIVPVLFRRVRCYKKGGIRFTMNGNPYFNLVLVYNVGGAGDVKAVLIKGSSSGWLPMTKNWGQNWQSNTHLVGQSLSFKVTTSDGRSVTSFSVVPAHWRFGQTFQGRQF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00270 237 Pfam Expansin C-terminal domain 146 223 IPR007117 -
Pste6g00270 237 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 33 145 IPR007112 -
Pste6g00270 237 Gene3D - 143 237 IPR036749 -
Pste6g00270 237 SUPERFAMILY PHL pollen allergen 142 234 IPR036749 -
Pste6g00270 237 PANTHER EXPANSIN-A15 13 237 IPR002963 GO:0009664
Pste6g00270 237 SMART dpbb_1 50 135 IPR007112 -
Pste6g00270 237 PRINTS Expansin/Lol pI family signature 32 50 IPR007118 GO:0005576
Pste6g00270 237 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Pste6g00270 237 PRINTS Expansin/Lol pI family signature 14 29 IPR007118 GO:0005576
Pste6g00270 237 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Pste6g00270 237 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Pste6g00270 237 PRINTS Expansin/Lol pI family signature 182 196 IPR007118 GO:0005576
Pste6g00270 237 SUPERFAMILY Barwin-like endoglucanases 10 163 IPR036908 -
Pste6g00270 237 Pfam Lytic transglycolase 51 134 IPR009009 -
Pste6g00270 237 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 234 IPR007117 -
Pste6g00270 237 FunFam Expansin 145 237 - -
Pste6g00270 237 CDD DPBB_EXPA_N 14 140 - -
Pste6g00270 237 PRINTS Expansin signature 45 59 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 72 83 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 120 133 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 86 96 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 156 177 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 144 156 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 220 236 IPR002963 GO:0009664
Pste6g00270 237 PRINTS Expansin signature 103 120 IPR002963 GO:0009664
Pste6g00270 237 Gene3D - 2 140 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00270 Pste-Chr6 908578 913493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00270 14 237 Expansin Gene Family AT5G05290 66.960 1.17e-110 317