Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00250 GAAGCAAGTGGGGGAGTTGGCCGAGTCTTGAAGTATAATCATCGTGCATGCATTTTGGTGCCTCTTTCTTTCTCCTTTCTTATTCTGCATGCACACGCCTTCTCTCTCTTTCTCTTTCTCTTTCTCTCGGTTTCACCCACTCTTCTTTTCTCTCCGAATCTTCCGGTGACCGGAACTTCCCCTCGCGAACTTCCGGCCACCGGAGCGCCAACTCGAGCTTCTCTCTCCGGCTTAATTTCGCTTGTGGAATTGGAGTTGAAAATGGAGTCAAGGAGTTGCATGAACGTGGCGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGCGATAAGTGCGGTTCTGTTTATGAGCAATCAACATATTGTGATATGTTTCACTCAAATGATTCTGGTTGGAGAGAATGCACTTCATGTGATAAGCGTCTCCATTGCGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGCGTAAGCTGCATAAGCTGTTCAAGGAAATCAGGATTGAAACCTATTGCAAGCAATGAAAAGCCCAATGTATCCGGGACATCGAAAAATTTAAATACACAGCAGTGCACATCTCTGGCTAACCAATTAACTGTGAGGGGTATACAGCTAGGCCATTATGCAGAGAATGATGGGCTTAAGTGCTGGTTCAAAACTCATAATGTTGAAACAGATGGGCCATCTACAGAAATAAAACCAGAAATTTTACCCTCAGTTGGAGAACTTGGAAACACTTTGGTGTCACAGTTTCGTTGTGAGTCTAATGGATCATCTAAGGCTTCCAAAGCAGAGAACTGTAAGGCAGACACAGAAATGCGAGATATATATGAATCATTGTCACAGACAAATTTGACTATGGCCCTTGCTGCTCCTTTGGGAAATTCAAATCCCTTTCATGGGGCTGTTATAGATGAAAGGGAACAAAGTAAAACATCTCCAATTCTACTAGGCTCAAGGTCTCGCCATCTTTTACCCAAGCCTCCAAGGTCTATTGGGACAAGCTTAGAAGCAAATGCAAGCATGGTATCCCAGATTCGTGTAGCAAGACCACCAGCTGAAGGACGGGGAAGGAATCAGTTGCTTCCACGCTATTGGCCTAGGATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAACTCCACGATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGGATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCAATATCACAACCAGAGGGGCTTCCTTTACGAATCCAAGATGTGAAGGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGAATGTATGTTTTAGAAGGTGTAACCCCTTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACAGTAACATTTAGCCGAATGGAACCTGAGGGTAAACTTATAATGGGATTTAGAAAGGCAACAAATTCTACTGCAGTACAGGAAACACTTCCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAAAAAATGGAACTCAGCTGATGGTGACATGAATTGGCATAACATTGACATGCCTGAAAGCAGAAAAAGAGAGGGGCTGCCATTGCCACCTGTGCTGGTTCCTGAGAAGAAAAGAGCTCGGAATATTGGGTCAAAAAGTAAGAGGTTACTTATTGATAGCCAGGACGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTGCTCCGTCCACCTCCAACTGTTAAGCCAAGCATTGTCATGATTGAGGATCATATATTTGAAGAATATGAATGGACACAATGTGATAGTTGCTCAAAATGGAGGAAGTTGCCCGTTGATGTACTTATTCCCCCAAAGTGGACATGTGTGGAGAATTTATGGGACCAGAGCAGGTGTTCATGTGCTGCACCCAATGAATTGAACCCAAGGGAACTGGATAACCTTCTTAGGCTGAATAAAGAATTCAAGAAACAAAGACTGGCAGCAAGCCAGAGACCTGTCCTGGAACAAGAACCTTCAGGACTGGATGCTTTGGCAAATGCTGCAATACTTGGAGATGATGCAAGTGATTCTGGCAGGACACCAGTTGTTACCACCACTAAACATCCTCGGCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGAAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGACGATTTAAAACCCTGATGATGCGAAAGAAAAAGCGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGCGGACCAAAGATGAATCGGAAGTAGATAACACCTGTCAACATTTAACACAAGTGGATGGTTTGGAGAATGAACTAAGGGTGTCTAATGAGTTGGATTCAAGGAGTCAAGACCAAGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTCCCAACCTGATCGAGAAGACATGCAAGCTGGGCCAAACAGTGTGAGCATGACGAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACTTACCTGAAGCAAAATGGTCTTACTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCTATGAGAGTGAGGGAAGACACAATGAGGATTGTGGTACTGCTTCAGTTATTCATGAGCAAGAAAGCAGTCCTGAGGAGAACAGTGGGCAAGATAAAGACCAAAACAATTCACTCTCGTGAGATCCTACCAATTACATTTTCTTTTTTCCTTTTTTTTACTCCAAAATCATTTTACAGGAATCCTTGCGTAAGTTATAAAAATTATAGGAGGTTCATTTGTATGTCTATATATTTTTTGTTGTCTGTGTCTTGTGGTTGTGAAACTTCCCCCAAAATTCGGTAACATATATACGCGAAAGCGTGTGCTTTAGGGTTGTAAACTAGTGAGGCAAGGAGTTGAAGGAAAGCACCTCCTTGCTGTGTTATAACACACATGGTTTTGTTTCTTTGGTATGTGTGCTAAGTTTGAATAAGCATCGTTTGTCTTCTTTTTTGTTATATGGAAGAAGGGAGAGGATATTTTCGTTTTCTAGTACGTGTGTTTCGTTTGAATAGCCCTTATTCGGCTTGCTTTTTTAATAGGAAAATGCTCTTTTGCACGAAAAGCATTTCAACTCATGTTGTACAGAACTAATGTTACTGGTTGATGAATG 3383 0.4295 EASGGVGRVLKYNHRACILVPLSFSFLILHAHAFSLFLFLFLSVSPTLLFSPNLPVTGTSPRELPATGAPTRASLSGLISLVELELKMESRSCMNVACATLTTIRWRKGWALRSGEFADLCDKCGSVYEQSTYCDMFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCSRKSGLKPIASNEKPNVSGTSKNLNTQQCTSLANQLTVRGIQLGHYAENDGLKCWFKTHNVETDGPSTEIKPEILPSVGELGNTLVSQFRCESNGSSKASKAENCKADTEMRDIYESLSQTNLTMALAAPLGNSNPFHGAVIDEREQSKTSPILLGSRSRHLLPKPPRSIGTSLEANASMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMEPEGKLIMGFRKATNSTAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSADGDMNWHNIDMPESRKREGLPLPPVLVPEKKRARNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHIFEEYEWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPVLEQEPSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDNTCQHLTQVDGLENELRVSNELDSRSQDQVAEAAKGQLDLNSQPDREDMQAGPNSVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTYESEGRHNEDCGTASVIHEQESSPEENSGQDKDQNNSLS 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00250 969 CDD B3_DNA 403 504 IPR003340 GO:0003677
Pste6g00250 969 ProSiteProfiles Zinc finger CW-type profile. 649 699 IPR011124 GO:0008270
Pste6g00250 969 ProSiteProfiles B3 DNA-binding domain profile. 405 506 IPR003340 GO:0003677
Pste6g00250 969 SUPERFAMILY DNA-binding pseudobarrel domain 402 505 IPR015300 -
Pste6g00250 969 Pfam B3 DNA binding domain 405 504 IPR003340 GO:0003677
Pste6g00250 969 Gene3D - 383 510 IPR015300 -
Pste6g00250 969 FunFam B3 domain-containing transcription repressor VAL1 383 510 - -
Pste6g00250 969 SMART B3_2 405 505 IPR003340 GO:0003677
Pste6g00250 969 MobiDBLite consensus disorder prediction 945 969 - -
Pste6g00250 969 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 90 921 - -
Pste6g00250 969 MobiDBLite consensus disorder prediction 917 969 - -
Pste6g00250 969 MobiDBLite consensus disorder prediction 854 887 - -
Pste6g00250 969 Pfam CW-type Zinc Finger 655 696 IPR011124 GO:0008270
Pste6g00250 969 Gene3D - 653 708 - -
Pste6g00250 969 MobiDBLite consensus disorder prediction 917 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00250 Pste-Chr6 841376 849788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00250 88 920 B3 DNA Binding Superfamily AT4G32010 49.652 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste6g00250 B3 2.1e-15 CL0405