Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00233 CTCTGTCTCTCTTCTCTGCTTTTTGTTGTTGTTGTTCCTCTTCACTATTTTCTCAGCTATCGTGACCTTATACCAACCCTTTTGCGAAGGTCCTTCTGGGCTGTTGTGCGGATCAACTCTCAACCTTCAATTGTTTTGCTGATTGGGCTCTTCCTGTACCATGGATGGTATTCATGAGGGTGATTCTCGGATACACATCAGTGATGGGCAGCATTCTATACATGTGCCATATGTGCAAGAACATGAGCATAATGGGCTGCACCATATGAGCAATGGGAATGGGATTGATGATGATCAGAATGAAGGTGGTGATACTAACTCTCGTGGTAGTGATAATGTGGAAGGTGAAGTCCCCTCCAACCATGGAAGTCTCCCAGACAATCACGCCATAATGATGGATCAAGGGGGTGATGGTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCTGTCTCACCAGAAAAGGTTCAAGCTGTACTACTGTTACTAGGAGGCCGCGAAATACCTCCAACAATGCCTGCCATGCCAGTATCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCACAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAAAGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGTTGTAGGCACTGTGGCATTGGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCTCGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACTTATCAAGGGCGGCACCCTTATCCGGACCTATCAAGAATGAGAATAAAAGTTTAGAGGCCAACCATATAGTCCATAGAGTTGCAGCAGAAGCAGATGATTCCTCGTGAAAAACTTGATATTTTGGTCAGAATGGAGAGCTATTCCATGAAATAAGGGTGATGGGAGAGTGCTTGCTCCTAGATAAGAAATTGTGAACGAGGGCTTAATCTACTATCTTTTTAATGAAAATGTTTAAATGAGCATTCTGTATTTTCTTTTAAATATATGCAGAAAGTCATTATTACCCTGTGACAGCTTAGTATTTTTGGGGTATAATTTATGTTTGGTATTCTGAACAGCTTCAATGCACTTCCTGATAGTTTGAGCAGTGCAGGTGTAATTTAAAAAATTGGTCCGCTTTTTACGTAGTTTGAAGTAGCTAAGTTGTTTCGGATG 1259 0.4273 MDGIHEGDSRIHISDGQHSIHVPYVQEHEHNGLHHMSNGNGIDDDQNEGGDTNSRGSDNVEGEVPSNHGSLPDNHAIMMDQGGDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALSCRHCGIGEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPLSGPIKNENKSLEANHIVHRVAAEADDSS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00233 256 CDD ZnF_GATA 181 237 IPR000679 GO:0006355|GO:0043565
Pste6g00233 256 MobiDBLite consensus disorder prediction 31 83 - -
Pste6g00233 256 PANTHER GATA TRANSCRIPTION FACTOR 28 25 180 IPR045280 GO:0006355
Pste6g00233 256 SMART tify_2 82 117 IPR010399 -
Pste6g00233 256 Pfam CCT motif 150 181 IPR010402 GO:0005515
Pste6g00233 256 Pfam tify domain 87 116 IPR010399 -
Pste6g00233 256 ProSiteProfiles GATA-type zinc finger domain profile. 176 235 IPR000679 GO:0006355|GO:0043565
Pste6g00233 256 MobiDBLite consensus disorder prediction 40 64 - -
Pste6g00233 256 SMART GATA_3 176 229 IPR000679 GO:0006355|GO:0043565
Pste6g00233 256 Pfam GATA zinc finger 182 218 IPR000679 GO:0006355|GO:0043565
Pste6g00233 256 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Pste6g00233 256 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 228 - -
Pste6g00233 256 ProSitePatterns GATA-type zinc finger domain. 182 209 IPR000679 GO:0006355|GO:0043565
Pste6g00233 256 Gene3D - 178 226 IPR013088 GO:0006355|GO:0008270
Pste6g00233 256 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00233 Pste-Chr6 778257 784015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00233 1 245 Tify Gene Family AT1G51600 53.220 6.86e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste6g00233 GATA 1.4e-12 CL0167