Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00231 AAAAGTTTGCCTCACTCCTCTGCATCACGTTCCTCTCTCTCTCTCAGACACTTACAATCACAAAGCATAACACCCAGTTTTCAGACATTATCAATCTGTGAAATGAGCCAACGTGTACCTAACTGCGATGTGGACGAGAGTAACATCCCCGCTGCCACAAAAAATCCCCTTCTTCCCAACTTCGGTTTCATTTCCCATGAAGTCCCCATGTTGGGCTACAAACACAAAGTTGCGGAACCAGCGTGCAAAAAGGTACAACAACAACAACAACAACAACCTTGGACACACGAGGGTAACACTACATGGGACAATTATAAACCTCGTGGAAGTGGTGGTACCTTGGAGTCCATAGTGAACCAACATGTCAGCAAAAGCTACCACAATAATTTGATGGTTATGGATGCCTTGGTGCCCTGCTTCTCCAAACAGGGCACGCGCAAGGTGCAAAACTCGGGACTAAGGCTTGGCGGGTGTTCCTCACCGCGCGTCAGGTCTGGGGATAGCGTGGAGGTAAAGGACGAACTGCGCAAACGCGCTGGGCTGGCGGCGCGTGGGACTGGAACGCACGACGTGACAGCTTGTAAGAAGTGGAGTCTCAGTGGTGGTGAAACTTGTGGTAGGGACTCCAGTGTGGCTTTCAATTCTGCTTCCATGGGTTCGCCGGAAAACACCACCAGCTCCGGGAAGCAGTACACCAGGACCACCGCCAACGACGACCATGATTCCGTTAGCCACCGTATGTCGCAGAGTGAGGCGCGGGATGAGGATTGCAAGGCAACAAGATCTTCTGAATCCAACAAAAGAAACAAAGCTTCAGTTGTGCACAACCAATCTGAAAGGAGAAGAAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAATGCTGGTCCCAAATTCCAGTAAGACCGATAAAGCTTCGATGCTGGATGAGGTGATTCAGTATATGAAGCAATTGCAAGCACAAGTGCAAATGATGAATTGGATGAAAATGTACTCTTCCATGATGCTGCCAATTACCATGCAACAACAGCTTAAAATGTCTATGATGATGGCTCAGATGGGCATTGGAATGGGAATGAATAAGGATATGGTTATGAATATGAACAACATCATGAACATTCCCCACATCCCTCGTATGCTCCATGTTCCTCCCTTCATGCCTATGGCCTCATGTCCCGATCCATTACAAGGAGCATCAAACAAGTCTGTGGCCATGGATGCATACAGTAAGATGGCTGCCCTGTATCACCAGCTGTACAATTCTTCAGATTCTAGTTCCAAGAGCTGAGCTCTAAATGTTCTATCATCCTCACAGTTTGATGAGCTATAAATTAAAAGTGTGTTAATTTGTGTTTATTTTTAGTGAGAAAGATTGCAGTGAGAATCAAGTGTCTTTTTTCTTCTTATTTTTATCTGCAAAATAAAATATAATTTCATTGAAAGTGTCGCATGCAGTAGC 1461 0.4559 MSQRVPNCDVDESNIPAATKNPLLPNFGFISHEVPMLGYKHKVAEPACKKVQQQQQQQPWTHEGNTTWDNYKPRGSGGTLESIVNQHVSKSYHNNLMVMDALVPCFSKQGTRKVQNSGLRLGGCSSPRVRSGDSVEVKDELRKRAGLAARGTGTHDVTACKKWSLSGGETCGRDSSVAFNSASMGSPENTTSSGKQYTRTTANDDHDSVSHRMSQSEARDEDCKATRSSESNKRNKASVVHNQSERRRRDKINQRMKELQMLVPNSSKTDKASMLDEVIQYMKQLQAQVQMMNWMKMYSSMMLPITMQQQLKMSMMMAQMGIGMGMNKDMVMNMNNIMNIPHIPRMLHVPPFMPMASCPDPLQGASNKSVAMDAYSKMAALYHQLYNSSDSSSKS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00231 395 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 90 393 IPR031066 -
Pste6g00231 395 CDD bHLH_AtPIF_like 236 298 IPR047265 -
Pste6g00231 395 MobiDBLite consensus disorder prediction 178 199 - -
Pste6g00231 395 Coils Coil 242 262 - -
Pste6g00231 395 Gene3D - 230 297 IPR036638 GO:0046983
Pste6g00231 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Pste6g00231 395 MobiDBLite consensus disorder prediction 200 231 - -
Pste6g00231 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 303 IPR036638 GO:0046983
Pste6g00231 395 Pfam Helix-loop-helix DNA-binding domain 240 286 IPR011598 GO:0046983
Pste6g00231 395 MobiDBLite consensus disorder prediction 117 137 - -
Pste6g00231 395 MobiDBLite consensus disorder prediction 178 250 - -
Pste6g00231 395 SMART finulus 242 291 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00231 Pste-Chr6 773707 777824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00231 1 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 40.000 6.50e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g00231 HLH 9.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02953 5 22399359 22407143 Pste6g00231 6 773707 777824 PCT