Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00215 AACAAAATTACTCCCTAGCTTCGTTGTTATATTTGCAAATCGCATCATGGAAGCTCTTCGTTACATTTCTTCTGTTTTAGTATTTTATTCTCTGCTGCTAATCCGTTGCCATTGTCTCAATCTCAAATTATTTAATTCTTCCAAAATTCAAATCGAGGATCAATGGCAAGTTGCTGCAGCTACTTGGTACGGACCACAAGAGGGTGCTGGCTCGGATGGTGGTGCTTGTGGATACACTGAGAGTGTAGAAAATCCTCCACTCTCAAAAATGGTATCAGCTGGAGGTCCTTCTCTTTTCAGAGGTGGCAGTGGATGTGGGGCTTGTTATCAGGTGAAATGCACAGAAAATGCAGCATGCTCAAGAAACCCAGTGAGTGTAATGATATCTGATGAATGCCCCAACTGCTACTTACGATCTGTCCATTTTGATCTGAGTGGCACTGCCTTTGGTTCCATGGCAACTCCAGGCCAGGCAAATAATCTTCGCAATGTTGGCCAGCTTAATATCCTGTACAGAAGGGTTGCATGTTCCTTTCAGAACTCTATAACCTTTACCATCGACAATGGGGCCACCCAGTACTATTTTGCTATCGAAATAGAATACGAAAATGGCGATGCTGACCTTGTGGACATTAAGTTGAAACAAGCTAATTCTAACACGTGGCTTCCAATGAGGCGTTCATGGGGTGCAAGGTGGGCTTTGAACTTAGGTGTACAATTACAACCTCCATTCTCTTTTCAACTCACAGAGTTAGGCAACAACTATTCCGAGTGCATTATGGCTGATAATGTAATTCCACGTGAATGGCAACCTGGCCAAGTTTATCGATCTGCTGTCAATTTTTCTGGGAAAAGTAAAAAATGTTAGATTCATTCTTCCTGTGAATGAGAACACCGAAAATTAAGAAGCTATAGAACTGTCAGATCATATTTAAATAAGTTTACCCTAGTTGCAAGTAATGTAAACAGTTCATATAAATTAATATATACATTATTCTAGAAAA 1004 0.4044 MEALRYISSVLVFYSLLLIRCHCLNLKLFNSSKIQIEDQWQVAAATWYGPQEGAGSDGGACGYTESVENPPLSKMVSAGGPSLFRGGSGCGACYQVKCTENAACSRNPVSVMISDECPNCYLRSVHFDLSGTAFGSMATPGQANNLRNVGQLNILYRRVACSFQNSITFTIDNGATQYYFAIEIEYENGDADLVDIKLKQANSNTWLPMRRSWGARWALNLGVQLQPPFSFQLTELGNNYSECIMADNVIPREWQPGQVYRSAVNFSGKSKKC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00215 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
Pste6g00215 273 CDD DPBB_EXPB_N 40 161 - -
Pste6g00215 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Pste6g00215 273 Gene3D - 26 162 IPR036908 -
Pste6g00215 273 Gene3D - 163 267 IPR036749 -
Pste6g00215 273 Pfam Lytic transglycolase 77 144 IPR009009 -
Pste6g00215 273 Pfam Expansin C-terminal domain 167 251 IPR007117 -
Pste6g00215 273 SUPERFAMILY Barwin-like endoglucanases 36 164 IPR036908 -
Pste6g00215 273 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Pste6g00215 273 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Pste6g00215 273 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Pste6g00215 273 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Pste6g00215 273 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Pste6g00215 273 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Pste6g00215 273 SUPERFAMILY PHL pollen allergen 166 262 IPR036749 -
Pste6g00215 273 SMART dpbb_1 76 156 IPR007112 -
Pste6g00215 273 PANTHER EXPANSIN-B3 18 266 - -
Pste6g00215 273 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Pste6g00215 273 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Pste6g00215 273 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Pste6g00215 273 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Pste6g00215 273 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Pste6g00215 273 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00215 Pste-Chr6 703351 707060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00215 22 266 Expansin Gene Family AT1G65680 54.032 3.94e-96 282