Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00213 ATGGCTTTGATATTGGAACAAGAATCAAACTTCAAACACTTTTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGGAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAAGTGGTCACATGGATGATGAAGACCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGGGATGTGCCACCAAGCAATAAACGCATGTATGCCCTAAGAACAAACCCAAATAGGCTAAAGAGTTGTAGGGTATGTGAGAATTGTGGCAAAGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACCTCTGAGGATGGTGAGTCCTTAGTCTCCTCTCCGGGGTCCGACGCCGATGATGGTGGTGGCATCGGTGGAGGCGGCCGGAGAGGGTGTGGTTGGTCTAAAAGGAAAAGGTCTTTGAGGACTAAGGTTGGTAGCTTCAATTACAATTGTCCTTCAAGCGAGGAAGAAGACCTTGCAAATTGTTTAATGATGTTATCCAATGCCATTGTAGAGCCTCTTGCTGGGGAGCCTGAGGAATCTAGTGCATCCGCTAGCAAAGAGGAAGAACAACGAAGAAATCCAATGAACTTCATGGCACCATTGTCATACAAAGTTAATAACAATAATAATAATAATAACCATAACAACAACTTTGTTGATGACAAGGCCAAAGGAGTTGCCAAGGGCTTGTTTGAATGCAAAGCATGCAAAAAGGTTTTCAATTCCCACCAAGCATTGGGCGGCCATAGAGCAAGCCACAAAAAGGTTAAGGGGTGTTTTGCTGCAAGACTAGAGAACCTTGATGACAATCTCACAGAGGATGATGTCATCACACATGAAGATTTCTTCCCTACAAAATCAAACTCCACCCTCCAATTTGATCATGGCGCCAACACCACATTGGCTTCTTCCTCTAAGAGAAAAGCCAAAGTGCACGAATGCTCCATTTGCCATAGGAGTTTCTCTTCTGGACAAGCATTGGGGGGTCACAAAAGGTGTCATTGGATCACATCAAATGCACCTGACACCTCCTCATTGACAAGATTTCAACAATTTCAAGACCATGTCGATCAAATACCAAAGTTTGATACCTCTTCTGAGCCTCTTGATCTCAAATTAGACCTTAACCTTCCTGCACCTTCAAATGATCATGCCAGAAGGAATGTGTCTACAGAAATTTACTTGCAGCCTTGGGTTGCATCAAAGGAAGCTAAAGATGATAACAATAGTCAGTGTCAAAGTCTTCACCACCATAACAACAATTTAGATATTGACAACAATGATGAGGACAAAAACACCAACAACTCAATGCAAAATGTGGATAATGAAGCTGATAGTAAGATCAAGTTGGCCAAGCTAAGTGAGCTAAAGGACATGAACACTGGTGGCAGTTCTTCGCCATGGTTGCAGGTGGGAATTGGTTCAACTTCCAATGATATGGCAACTGATAACTGCTGA 1467 0.4294 MALILEQESNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDEDQASDWEDRLGGDVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDGESLVSSPGSDADDGGGIGGGGRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVEPLAGEPEESSASASKEEEQRRNPMNFMAPLSYKVNNNNNNNNHNNNFVDDKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLENLDDNLTEDDVITHEDFFPTKSNSTLQFDHGANTTLASSSKRKAKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSSLTRFQQFQDHVDQIPKFDTSSEPLDLKLDLNLPAPSNDHARRNVSTEIYLQPWVASKEAKDDNNSQCQSLHHHNNNLDIDNNDEDKNTNNSMQNVDNEADSKIKLAKLSELKDMNTGGSSSPWLQVGIGSTSNDMATDNC 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00213 488 MobiDBLite consensus disorder prediction 408 447 - -
Pste6g00213 488 Gene3D Classic Zinc Finger 231 337 - -
Pste6g00213 488 MobiDBLite consensus disorder prediction 38 59 - -
Pste6g00213 488 SMART c2h2final6 234 256 IPR013087 -
Pste6g00213 488 SMART c2h2final6 13 35 IPR013087 -
Pste6g00213 488 SMART c2h2final6 315 337 IPR013087 -
Pste6g00213 488 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Pste6g00213 488 PANTHER OS02G0659100 PROTEIN 3 481 - -
Pste6g00213 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 337 IPR013087 -
Pste6g00213 488 MobiDBLite consensus disorder prediction 408 423 - -
Pste6g00213 488 MobiDBLite consensus disorder prediction 462 488 - -
Pste6g00213 488 SUPERFAMILY beta-beta-alpha zinc fingers 233 337 IPR036236 -
Pste6g00213 488 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Pste6g00213 488 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Pste6g00213 488 MobiDBLite consensus disorder prediction 107 135 - -
Pste6g00213 488 Gene3D Classic Zinc Finger 10 103 - -
Pste6g00213 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Pste6g00213 488 Pfam C2H2-type zinc finger 314 339 - -
Pste6g00213 488 Pfam C2H2-type zinc finger 234 258 - -
Pste6g00213 488 Pfam C2H2-type zinc finger 13 35 - -
Pste6g00213 488 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00213 Pste-Chr6 698570 700036 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00213 137 380 C2H2 Transcription Factor Family AT1G02040 34.286 7.16e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste6g00213 zf-C2H2_6 1.6e-12 CL0361