Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00206 ATGGAGAAGCACAAGTGCAAGCTTTGTTTAAGGAGTTTTGCAAATGGAAGAGCCTTGGGAGGTCACATGAGGTCTCATATGATGAACCTACCTGTTCCTCCCAAACAGAGCGAGTTCGTGCCTGTTCAACTCAGTTTTGAGGCCGACTCATCTCCTTCTCAATCTTCATCTTCTTTCTATGGTCTAAGAGAGAATCCCAAGAAAAGCTTTCGTTTTGCAGATCCTGAATTTTCGTTTGCAGCAGACACAGGCTCTGTGATCCTCCAAGACAGAGAGAGCGAAACAGAATCATCGAAGAATCCCACAAAGAGACGATCCAAGAGAGCGTGGCAACTCAGGGAACTCGAGAAAAAGATGAAATTATACGAAAGTGTTAACAAGAATGAATCTGCAAGTTCTGCTTCTGACACAACAACAGAAGAAGACGTCGCATTCTGTCTCATGATGCTGTCTCGCGACAGGTGGAAAGAACATAGGCATAACATAAAACACGAACAGGATCAGTATGTTGATGAGATTGAAGCTGAAGATGATGATGATGATGACGACGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGTTATGAATCAGAAGAAGAAGAACTGAAATCTGTTAAAAAAACTAACAGGGTGAAAGGAAGGTACAAATGTGAAACGTGTGACAAAGTGTTTCGATCTTATCAAGCTCTTGGAGGACACAGGGCGAGTCACAAGAAGATCAAGTTAAACTGTGAACCAGAAGCTGAAGTTGAAGTTGAGCATGTTGTTGTGGAGAAGAAAATTCATGAATGCCCTGTTTGTTTTAGAGTTTTTGCTTCAGGTCAAGCTTTAGGTGGACACAAGAGAACACATGTTATTGGTTCTTCTGCTACTCTAACTGTTTCAGTTAGAGCTTCTTCTATTGCTGCTACTAGAGTTGCAGATAGTTTGATAGATCTCAATCTCCCTGCCCCAGTAGATGAGGAAGAGGATATTAGCCAGTTTGGTGACTCTGCCGTTTCGGACGCAGAATTTTTTAAACAGTGA 1026 0.424 MEKHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKQSEFVPVQLSFEADSSPSQSSSSFYGLRENPKKSFRFADPEFSFAADTGSVILQDRESETESSKNPTKRRSKRAWQLRELEKKMKLYESVNKNESASSASDTTTEEDVAFCLMMLSRDRWKEHRHNIKHEQDQYVDEIEAEDDDDDDDEEEEEEEEEEGYESEEEELKSVKKTNRVKGRYKCETCDKVFRSYQALGGHRASHKKIKLNCEPEAEVEVEHVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSSATLTVSVRASSIAATRVADSLIDLNLPAPVDEEEDISQFGDSAVSDAEFFKQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00206 341 Coils Coil 181 208 - -
Pste6g00206 341 MobiDBLite consensus disorder prediction 92 110 - -
Pste6g00206 341 MobiDBLite consensus disorder prediction 171 198 - -
Pste6g00206 341 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
Pste6g00206 341 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pste6g00206 341 Coils Coil 112 132 - -
Pste6g00206 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pste6g00206 341 MobiDBLite consensus disorder prediction 83 110 - -
Pste6g00206 341 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 339 IPR044303 GO:0006355
Pste6g00206 341 Gene3D Classic Zinc Finger 212 284 - -
Pste6g00206 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 284 IPR013087 -
Pste6g00206 341 Pfam C2H2-type zinc finger 262 284 - -
Pste6g00206 341 Pfam C2H2-type zinc finger 214 239 - -
Pste6g00206 341 Pfam C2H2-type zinc finger 4 27 - -
Pste6g00206 341 SMART c2h2final6 4 26 IPR013087 -
Pste6g00206 341 SMART c2h2final6 215 237 IPR013087 -
Pste6g00206 341 SMART c2h2final6 262 284 IPR013087 -
Pste6g00206 341 MobiDBLite consensus disorder prediction 163 204 - -
Pste6g00206 341 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Pste6g00206 341 SUPERFAMILY beta-beta-alpha zinc fingers 214 284 IPR036236 -
Pste6g00206 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00206 Pste-Chr6 669801 670826 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00206 1 323 C2H2 Transcription Factor Family AT3G60580 47.929 7.29e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste6g00206 zf-C2H2_6 6.3e-12 CL0361