Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00199 ATGCCGCATGGTGGTGGGTCTTTGCTGGTTGCTTTAGAGCGGATGTGGGCATCAGATCATCTTACTGGGCCATCTCAATACAGAGTTAGGGGTGGCAGGGGTGGTAGACCTTTTAGAGGTGCTGGTCGAGGTCGTGGCCATGGTAGGGGACATGGAGTGGGGGGTGGCAGACATGTATCTCATTCTTCTGGACCTGCTATTTCTAATGTGCCCGGTGTATCTGTTGTTGCTGGGGCTACTGCAGTGATAGAACCTTCTTCATCAATCTCTGCACACACAAAGTTGCCAAAACCTGCTCGAGTGCAACCACCAGTAGCACCACGCAAGGTGTGTTGTGAAATTTGTAAGGTTGAGTGCAATACTCCAGAAATCTTGGAGCAACACAAGAATGGAAAGAAACATCAAAAGAATATGAGAGTGCATGAAGAATTGCAAAGGCGTAATGCCATGAATGGACAACAGAGTGGGCAAATTCCTACCTCTCAATTGAATATAACAGATCAATCTAAGAAGGTTCAGGAATCAGAGAAAAATGGATGCCCCACAGAAAATATGGGCCCTGGGGTTACAGTTGATAATAGCAAGGAGGAAATACAGCTGCAGAATAATGTAGGAAACATTTCTGAGGTTCCAGCTGAACTACCTGAGGAGCAAACCATGGATACCTCTGCCACAAGAGGCCGAGGATTGAAGCGGAAGAAAAAAGGAGGAAAAGGAAGTAAATACATGAGAACTAATGATGGTTCAAAGCCAGTGGAACCTGCACAAACTGTGACTTTTAAATGCCAGTTGTGTAATGTTAAATGTGAGTCACATGTTGTTTATCAGAGTCATCTAACTGGGAAGAAGCACTTAGCAAAACTGAGGCGGGCTCAAGATCAAGCTTCATCTGGAGGACTCATAGGGCTTCAATCACTTTACCCACCAGACATCAATGCTCTGTCCAATGCAATTAATGCTCAAGTCCAACAAGGTGATAATGATCCTCAGGTACTTTTAGCTCAGCTCCTGCTGAGTGTACTTCAAGCACAGCAGACTCCAGCAACTGCGCCAGGGACAGGCAACATGGCTTCTCAGTTTCCAGCACCCACATCTATGGCTGGACCAAGTTATGAACCCCAGTTGTTGCAGACTCAACTATCTGGTACGATGGCACATCTTATGGAAAAGCCTTCTGAGGAAACAAAACCTGAGCTGTTACCTGCTACATTGGGGTCTAACGCTCAGCCAGGTTCAAGTGTCAGTGCCCAAATTGAAGGTGGAGATTCTGAAACTAAACAACAGGTGTGAAGCTTCAGGGAGTCCTGGTGTGACACTCGAAGCCAATTCAAGTGCAGTAAATGACTAAATAACCTTCAGAATGTGAAGCTCCCTCCACTTGGTATGATCAAGAAGATTTAATCTTTCTATTTTCTTTTAGGGGCCCAAAGTATTGTTAGTTACCTGTTGGGATTTTCTTTTCTATGGTAGATTTTAATACTGTAGAAATTGCTCGTATGAATGTCAGGATGTGTCAGAAAAATCTTTTATGACATTGGGTGATTGTTGTTGGGACCGTATTAGTTTAACAAGAATATGCAAGCATAATGCAGTTTACATTTGAGAAAACTGAAATAGACTCAATTTACATTGAGCATATCGGTAAACAAGTTTAACGGTGCAAAAATGTATGCGAGTGCTTTTGTCTCTGCATTGGGTTGTTTTTGTATATGCATGGGGTTCAAAGCCTTCAGTTTGAAACAAGTGGA 1748 0.4359 MPHGGGSLLVALERMWASDHLTGPSQYRVRGGRGGRPFRGAGRGRGHGRGHGVGGGRHVSHSSGPAISNVPGVSVVAGATAVIEPSSSISAHTKLPKPARVQPPVAPRKVCCEICKVECNTPEILEQHKNGKKHQKNMRVHEELQRRNAMNGQQSGQIPTSQLNITDQSKKVQESEKNGCPTENMGPGVTVDNSKEEIQLQNNVGNISEVPAELPEEQTMDTSATRGRGLKRKKKGGKGSKYMRTNDGSKPVEPAQTVTFKCQLCNVKCESHVVYQSHLTGKKHLAKLRRAQDQASSGGLIGLQSLYPPDINALSNAINAQVQQGDNDPQVLLAQLLLSVLQAQQTPATAPGTGNMASQFPAPTSMAGPSYEPQLLQTQLSGTMAHLMEKPSEETKPELLPATLGSNAQPGSSVSAQIEGGDSETKQQV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00199 429 SMART ZnF_U1_5 257 291 IPR003604 GO:0003676|GO:0008270
Pste6g00199 429 SMART ZnF_U1_5 107 141 IPR003604 GO:0003676|GO:0008270
Pste6g00199 429 SUPERFAMILY beta-beta-alpha zinc fingers 251 291 IPR036236 -
Pste6g00199 429 Gene3D Classic Zinc Finger 240 292 - -
Pste6g00199 429 Gene3D Classic Zinc Finger 95 143 - -
Pste6g00199 429 SUPERFAMILY beta-beta-alpha zinc fingers 106 142 IPR036236 -
Pste6g00199 429 MobiDBLite consensus disorder prediction 405 429 - -
Pste6g00199 429 MobiDBLite consensus disorder prediction 26 67 - -
Pste6g00199 429 MobiDBLite consensus disorder prediction 347 370 - -
Pste6g00199 429 PANTHER OS06G0651300 PROTEIN-RELATED 38 293 - -
Pste6g00199 429 SMART c2h2final6 110 134 IPR013087 -
Pste6g00199 429 SMART c2h2final6 260 284 IPR013087 -
Pste6g00199 429 Pfam Zinc-finger of C2H2 type 112 134 - -
Pste6g00199 429 Pfam Zinc-finger of C2H2 type 260 284 - -
Pste6g00199 429 MobiDBLite consensus disorder prediction 218 253 - -
Pste6g00199 429 MobiDBLite consensus disorder prediction 387 429 - -
Pste6g00199 429 MobiDBLite consensus disorder prediction 40 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00199 Pste-Chr6 645527 648266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00199 84 295 C2H2 Transcription Factor Family AT5G61190 25.352 8.78e-08 52.8