Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00175 ATGAGGCCGACGCAACGACCAGCGCCTTCGGGGACGGGGACGGGGACGATGATTCCGAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCGGGAGCAGCAAGGAGCAGCGGAGTCGGCAAAGGCGTATAGATCTGGTTCTGCCACTGCCACAGAGAGACAGAAAATTGGCGGTGCCGCTGCCGCTGCCGCCAACGGGGACGGGGAGCGGAGGAGGAGGAGGAGGAGGGAGCCAGCAGACGCAGCAGGTGATAGCGTTCGCAGAGCTGGAGAGGCTGAACCGGATCGGAAGCGGGAGCGGGGGGACGGTGTACAAGGTGGTGCATAAAACGAGCGGGAGGGTGTACGCGCTGAAGGTGATATACGGACACCACGAGGAGTCGGTTAGGAGGCAGATCCACAGGGAAATCCAGATCCTAAGGGACGTGAACGATGCGAACGTGGTGAAGTGTCACGAGATGTACGACCAGAACAGTGAAATACAGGTGCTGTTGGAGTTCATGGATGGGGGATCTCTGGAGGGGAAACACATACCGCAGGAGCAGCAACTGGCAGATCTGTCGAGGCAGATACTTAGGGGGCTGGCGTACCTGCACAGGCGTCACATAGTGCACAGGGACATAAAGCCGTCGAATCTGCTAATAAACTCAGGGAAGCAGGTGAAGATCGCGGACTTCGGGGTGGGTAGGATTCTGAATCAGACGATGGATCCGTGCAATTCGTCGGTGGGGACGATAGCTTACATGAGTCCAGAGAGGATAAACACGGACATAAATGATGGGCAATACGACGCATACGCAGGGGACATATGGAGCTTTGGAGTAAGCATACTGGAGTTCTACATGGGAAGGTTTCCCTTTGCTGTTGGGAGGCAGGGGGACTGGGCCAGCCTCATGTGTGCCATTTGTATGTCTCAGCCTCCCGAGGCTCCTCCTTCAGCCTCCCTTCACTTCAGAGATTTCATCAACCGCTGTTTGCAGCGCGATCCCTCTCGCCGCTGGCCATCCTTGCTGCAAGGTGGAATTTACGCCACTTTACTTGTCACCTTGCATTTGCATTTGTATACCATACCTGGGACACTGTCTTGTTGTGTTGTGACACTTTTGCTTAGCGTTACCCTTCTTTTCTAA 1149 0.5535 MRPTQRPAPSGTGTGTMIPNSNSNSNSNSNSNSNSNSGSSKEQRSRQRRIDLVLPLPQRDRKLAVPLPLPPTGTGSGGGGGGGSQQTQQVIAFAELERLNRIGSGSGGTVYKVVHKTSGRVYALKVIYGHHEESVRRQIHREIQILRDVNDANVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPQEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSGKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASLHFRDFINRCLQRDPSRRWPSLLQGGIYATLLVTLHLHLYTIPGTLSCCVVTLLLSVTLLF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00175 382 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Pste6g00175 382 MobiDBLite consensus disorder prediction 1 86 - -
Pste6g00175 382 MobiDBLite consensus disorder prediction 1 41 - -
Pste6g00175 382 SUPERFAMILY Protein kinase-like (PK-like) 95 342 IPR011009 -
Pste6g00175 382 CDD PKc_MAPKK_plant_like 94 340 - -
Pste6g00175 382 FunFam Mitogen-activated protein kinase 2 176 347 - -
Pste6g00175 382 Pfam Protein kinase domain 97 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00175 382 SMART serkin_6 96 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00175 382 ProSiteProfiles Protein kinase domain profile. 96 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00175 382 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 24 341 - -
Pste6g00175 382 Gene3D Transferase(Phosphotransferase) domain 1 178 346 - -
Pste6g00175 382 Gene3D Phosphorylase Kinase; domain 1 82 175 - -
Pste6g00175 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Pste6g00175 382 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00175 Pste-Chr6 570435 572017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00175 35 339 MAP Kinase Kinase Gene Family AT1G51660 72.555 5.40e-157 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Pste6g00175 Pkinase 1.4e-59 CL0016