Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00159 TATGCGTGGTTGACGTGTTCGTCGTCTGTAACGGCAACAGAACAGACTAAGTTGTTTCTCTCTCTAGGGTTTCCCTCTCCACTACCGTGCTTTGATCGGATCGCTGCCGTTTCCGGCGTCATTCCGATAATCGGCGGCATGAAGCTCACTGTGAAGACTTTGAAAGGGAGCCATTTCGAAATCAGGGTTCAGCCCTCTGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGTAAAGATAATTACCCTTGTGGACAGCAATTACTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAATAGAGAACAAAGTCTCAGAAGATGGCTTTCTTGTTGTTATGCTTAGTAAGAGCAAAACATCAGGTTCTGCTGCAGCTTCATCTGTTCAGCCTGCCACTGCCAGCAATCCTGCTACAACTGTCTCCACCTCAAATTTCACCCCTGCTTCCGATCCTCTAGTGCCAACTGAGGCTGCAAGCAACAGTACGCCTAGCACAGTTGCCCCACCTACGAATGTGTCTGCAGATACTTATGGTCAAGCTGCTTCGAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTGTGGACATGGGTGGTGGCAACTGGGACAGAGATACAGTTAGTCGTGCTCTTCGGGCCGCTTATAATAACCCAGAGCGTGCTATCGATTACTTGTATTCTGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCTGTTCCTCACCACCCAGGTAGTCAAACAACTGAAACAACTGGGCTTTCTTCTGGAGCAGTTCCTGTAGGGCCTAATTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTAGTACTGGTGCCGGACTTGGTTCGCTTGACTTCCTTAGAAATAATCCCCAGTTTCAAGCGTTGCGATCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGATTGATCCAAGAGCATCATGGGGAGTTTCTCCAGTTAATAAATGAACCTGTTGAGGGTTCTGAAGGAGATATATTTGACCAGACTGAGCAAGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCGATTGGAAGGCTTGAGGCTTTGGGATTTGATAGAGCCTCGGTGATAGAGGCATTTTTGGCATGTGATCGTGATGAGCAAATGGCAGCTAACTATTTATTGGAGAATGCTGGAGACTTTGAGGATTAAATGACTCTCTGGGAAGGAAATAACTGCTGATTTCCTGGCGAAGCTTGGAGTTAGGAGCTCGACATTCCTCCCTCCCCTCAGGCTTGCTTGCAGTTGCAGATGCCATTGCGGGTAGCTCTACTGCGGCTTTAGTTCTTTTTCTTTTTCATGTGCCAAAAACAAGTCACTAACCTCACATTGCTTCATAGTTTTGTTTGCCCTTTTTATTTTAACTTGGATTATATATGTAATGGGGTAGAGTTTGGATTTAGCCAAGTGTCATCGAAACACTTTCCGGCGTTCAACATTCACGTTCCACTTCCATTTTCGCGACGCTAACATAAAAGTAACAATTTGTTAGCTTAAAATATTTTGTAAATTTACGACGGACAAATAAATCAAATCCATGCAATTGGATGTTTGGGTGCTTATTGCGATATTGCAGTTCTCTATTCACCAACAATTAAAAAGGGTATCAAAAGTCTAATACGCTTGTCACAGTTAACATGACGTGTTTGTAAGTTTTATTTCGGAAGGAAATAAAGATG 1787 0.4376 YAWLTCSSSVTATEQTKLFLSLGFPSPLPCFDRIAAVSGVIPIIGGMKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLIENKVSEDGFLVVMLSKSKTSGSAAASSVQPATASNPATTVSTSNFTPASDPLVPTEAASNSTPSTVAPPTNVSADTYGQAASNLVAGSNLEQTIQQIVDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPHHPGSQTTETTGLSSGAVPVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDIFDQTEQDMPHAINVTPAEQEAIGRLEALGFDRASVIEAFLACDRDEQMAANYLLENAGDFED 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00159 419 MobiDBLite consensus disorder prediction 129 172 - -
Pste6g00159 419 NCBIfam UV excision repair protein Rad23 47 418 IPR004806 GO:0006289
Pste6g00159 419 SMART CBM 292 335 IPR006636 -
Pste6g00159 419 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 194 237 IPR015940 -
Pste6g00159 419 FunFam UV excision repair protein RAD23 homolog 189 239 - -
Pste6g00159 419 CDD Ubl_Rad23 47 120 - -
Pste6g00159 419 SUPERFAMILY Ubiquitin-like 47 131 IPR029071 -
Pste6g00159 419 SUPERFAMILY UBA-like 354 416 IPR009060 GO:0005515
Pste6g00159 419 Gene3D - 284 350 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste6g00159 419 PANTHER UV EXCISION REPAIR PROTEIN RAD23 47 408 - -
Pste6g00159 419 SMART uba_6 375 412 IPR015940 -
Pste6g00159 419 SMART uba_6 196 236 IPR015940 -
Pste6g00159 419 Gene3D - 366 414 - -
Pste6g00159 419 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 373 413 IPR015940 -
Pste6g00159 419 ProSiteProfiles Ubiquitin domain profile. 47 125 IPR000626 GO:0005515
Pste6g00159 419 SMART ubq_7 47 121 IPR000626 GO:0005515
Pste6g00159 419 FunFam UV excision repair protein RAD23 47 126 - -
Pste6g00159 419 Pfam UBA/TS-N domain 196 234 IPR015940 -
Pste6g00159 419 Pfam UBA/TS-N domain 375 410 IPR015940 -
Pste6g00159 419 SUPERFAMILY XPC-binding domain 291 357 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pste6g00159 419 SUPERFAMILY UBA-like 193 244 IPR009060 GO:0005515
Pste6g00159 419 CDD UBA1_Rad23_plant 190 239 - -
Pste6g00159 419 Gene3D - 44 126 - -
Pste6g00159 419 Gene3D - 189 239 - -
Pste6g00159 419 PRINTS DNA repair protein Rad23 signature 386 400 IPR004806 GO:0006289
Pste6g00159 419 PRINTS DNA repair protein Rad23 signature 320 342 IPR004806 GO:0006289
Pste6g00159 419 PRINTS DNA repair protein Rad23 signature 401 416 IPR004806 GO:0006289
Pste6g00159 419 PRINTS DNA repair protein Rad23 signature 369 385 IPR004806 GO:0006289
Pste6g00159 419 Pfam XPC-binding domain 294 349 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pste6g00159 419 Pfam Ubiquitin family 49 122 IPR000626 GO:0005515
Pste6g00159 419 FunFam UV excision repair protein RAD23 B 284 350 - -
Pste6g00159 419 FunFam UV excision repair protein RAD23 homolog 366 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00159 Pste-Chr6 515127 524225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00159 47 120 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 6.02e-07 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03801 3 30258395 30263506 Pste6g00159 6 515127 524225 PCT