LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00073	AACGACTTTGAAATCGTGTTGTTGTTGTTATGTTTGTTTCAAAATTAATGTTATTTTTTTCTTTCCTGCTGGATCAAAAGATAAAGCACCATCTTGCTTGTTTCCTTTGTGTTCTGCATCCCATTGTGCTAGAAAATGCACCACAACCTTAACCTTGCAAGGTTGTGGATTGCTTTGCTTGCGGTCTCAACCACCCTAGTTCATTGCAAAACTGCCTCCCAAGATGTTTCATCCCTCAATGTCATGTACACCAGCTTAAATTCCCCTTCAAAGCTCAGTGGCTGGAAATCAAGTGGAGGTGATCCTTGTGGTGACTCCTGGGAAGGAATCAAATGCTCAGGCTCTTCTGTCACAGAAATTGATTTGAGCAACAACAATCTCAAGGGTGATATACCATATCAACTTCCTCCAAATGCTCGTTATATAGATCTTTCTAGGAACGAATTCTCGGGAAGTATACCTTATTCCTTTTCTCAGATGGGTGATCTCAACCAACTAAATCTTGCACATAATCATCTCAAAAACCAGTTGGGAGATATGTTTGGGAAGCTCAGTAAACTCAAACAACTAGATGTATCATTCAATTCACTATCAGGAGACCTACCTCAGAGTCTCAAATCGCTAAAAAACCTCAAAAAGTTGCACCTGCAAAACAACCAATTCACTGGTTCAGTGGATCTCCTTGCCAGCCTTCCACTTGAAGATCTGAATGTTGAAAACAACAAATTTACTGGTTGGGTTCCCGAGGAGTTAAAGGATATAAATAATTTGCAAACCGGAGGAAACTCTTGGTCAAGTGGACCAGCACCTCCTCCTCCTCCTGGTACCCCCCCTATCAAGCATTCCCAGAAAAAGAATGATAAATCTGTTATTAGTGGAGTAGCTATAGCAGGCATAGCTTTTGGCGTACTAGCAGTAATTGTAATTGCTGTTGCTCTTTCTAAAAGAAGGGCATCGACAACTTCTTCACATTTTATTGATGAAGAGAGGCGTAGCCAGCATAGATCTTTTACTTCCCTTGCATCTCAGGATTTATCAAAAGATTCGGGTGCTGATGTCAGCAAAGACTACAGAGGTGGATTAAAGTCATTTGATTCCACTTCAATTGACGTAAAGGCTTTGCAAAAATCTCCATCAGTCGGTGTTAGGTCGTCAGTCTCCGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGTACATCAATCCGTGTTACTACTTTTTCACAGGCAGAGTTACAGTCTGCTACAGCTAATTTTGCTTCAGGTCGACTTCTTGGCAAAGGATCCATAGGATGTGTTTATCGAGCTAAATATGCTGATGGAAAGGTATTGGCTGTAAAAAAAATCAATCCTTCGGTTTTCCAAGGTGGGCCTCCTGAGGAATTCTCTCAGATTGTTTCAAGCATCACCAAACTTCACCACCCAAATATTGTTGAGCTTGTCGGATTTTGTTCGGAACAGGAGCGCATGTTAATATATGACTATTTCAGAAATGGCTCTCTCCATGACTTTTTACACTTGTCGGACGACTTCAGCAACCCGCTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACAGCTCGGGCTATTGAGTACCTCCATGTAATTTGTTCTCCTCCTTTATTGCACAAGAATATTAAGTCCTCCAATATTTTGCTTGACACGGATCTGAATCCTCGTCTCTCAGACTATGGTTTGGCATCCTTTCACCAGCGTACTAGCCAAAATCTTGGGGCGGGATACAATGCACCAGAATGCACAAAACCTTCAGCCTATACCCAGAAGAGTGAAGTATACAGTTTTGGGGTAGTCATGCTGGAACTTCTAACAGGTCGAATGCCTTTAGACAGTTCAAAGCCAAAAGCAGAACAATGTCTGGTTCGCTGGGCCACCCCACAGCTTCATGACATTAATGCGGTGGAAAAGATAGTGGACCCTGCCTTGCGGGGGCTATACCCTCCTAAGTCACTCTTCCGATTTGCTGATATCATCGCCCTTTGTGTTCAGTCTGAGCCTGAATTTCGGCCACATGTGTCAGAATTAGTTCAGTCTTTGGTACGATTAGTCCAACGTTCAAGTATGACAATGAGGGAGGATTTTGAGTGATGGTGAAGATGTCACTTCTAAACTTTGATGTCAATAACGAAAGATGTACTTCTCATAGAAATCATTTCAGTGATTCCAAATGTTGTTTTTTTTTTCTCTTTAAAAGTAGTTGTAGCGGTACAAGAAAAATAACATATGG	2272	0.4155	MHHNLNLARLWIALLAVSTTLVHCKTASQDVSSLNVMYTSLNSPSKLSGWKSSGGDPCGDSWEGIKCSGSSVTEIDLSNNNLKGDIPYQLPPNARYIDLSRNEFSGSIPYSFSQMGDLNQLNLAHNHLKNQLGDMFGKLSKLKQLDVSFNSLSGDLPQSLKSLKNLKKLHLQNNQFTGSVDLLASLPLEDLNVENNKFTGWVPEELKDINNLQTGGNSWSSGPAPPPPPGTPPIKHSQKKNDKSVISGVAIAGIAFGVLAVIVIAVALSKRRASTTSSHFIDEERRSQHRSFTSLASQDLSKDSGADVSKDYRGGLKSFDSTSIDVKALQKSPSVGVRSSVSDCVQSFNDNEFANRLNARRSTSIRVTTFSQAELQSATANFASGRLLGKGSIGCVYRAKYADGKVLAVKKINPSVFQGGPPEEFSQIVSSITKLHHPNIVELVGFCSEQERMLIYDYFRNGSLHDFLHLSDDFSNPLTWNTRVRIALGTARAIEYLHVICSPPLLHKNIKSSNILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTQKSEVYSFGVVMLELLTGRMPLDSSKPKAEQCLVRWATPQLHDINAVEKIVDPALRGLYPPKSLFRFADIIALCVQSEPEFRPHVSELVQSLVRLVQRSSMTMREDFE	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00073	665	Gene3D	Transferase(Phosphotransferase) domain 1	459	664	-	-
	Pste6g00073	665	FunFam	Protein STRUBBELIG-RECEPTOR FAMILY 8	347	458	-	-
	Pste6g00073	665	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 3	71	230	-	-
	Pste6g00073	665	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	459	663	-	-
	Pste6g00073	665	MobiDBLite	consensus disorder prediction	276	307	-	-
	Pste6g00073	665	SUPERFAMILY	Protein kinase-like (PK-like)	362	649	IPR011009	-
	Pste6g00073	665	Pfam	Leucine rich repeat N-terminal domain	28	68	IPR013210	-
	Pste6g00073	665	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	16	653	IPR046959	-
	Pste6g00073	665	SUPERFAMILY	L domain-like	32	213	-	-
	Pste6g00073	665	Gene3D	Ribonuclease Inhibitor	25	321	IPR032675	-
	Pste6g00073	665	Gene3D	Phosphorylase Kinase; domain 1	341	458	-	-
	Pste6g00073	665	ProSiteProfiles	Protein kinase domain profile.	382	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g00073	665	MobiDBLite	consensus disorder prediction	276	290	-	-
	Pste6g00073	665	MobiDBLite	consensus disorder prediction	212	241	-	-
	Pste6g00073	665	Pfam	Leucine rich repeat	71	128	IPR001611	GO:0005515
	Pste6g00073	665	Pfam	Protein tyrosine and serine/threonine kinase	385	649	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00073	Pste-Chr6	213480	223156	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00073	7	664	Strubbelig Receptor Gene Family	AT1G78980	58.952	0.0	811

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-V	Pste6g00073		PK_Tyr_Ser-Thr	3.2e-39	CL0016