LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g00062	atgaataggaaccagaatcagggctccgaggatgagagcttcattctcagccaggatctgttttgcacaccagattacttaaccccagagaaccagtttcctttaaagggtttccatgatttcaacatcaactttgaagaggaagatgtcccttgccccaagtcaccagagaagccaagtacttcaaaaggaaagagacgtcgaatcgattctaacttgggagatactctaagttctacatcttttggtgatcagccagttgttgaacttgggaatgattttgattttgttggagaggaagttactggtatgccgaaggctagagattatgtgtcacattctgcaatttcactgcgttgcagagttatgcctcctccttgcattagaaacccctatttggaaagcctttcagaaagggaaatggacccttttgaaaaccaaagatcaaaatttgaaggcctgttccctacactcactggtggtaatagtctttcacgctacagcactgactttcatgagattgagctaattggtaaagggaactttagcaatgttttcaaggtattgaaacgaatagatggatgcatgtacgctgtgaaatgcagcaccaggccactgtgtagagaaccagaaaggatgaaagctttgatggaagttcaagccctagctgccttaggtttccataagaacattgtggggtaccattcttcatggtttgaaaatgaacaagtgtatattcagatggagctatgtgatcacagcttatccgtaaaaaatcgtccagcattacttgctgcaggacatgaagcagaagctttatatcaggttgctagtgcattgcaatttatacatgagaagggaatggctcatcttgatgttaaacctgaaaatatttacgtcaaaaatggtgtttataagcttggtgattttggatgtgcaactcttcttgataatagcctgcctattgaggagggtgatgcacgttatatgcctctggaaatccttaatgagaattatggtcaccttgacaaggttgatatcttctccctgggagtttcaatttttgatctaattaccaggtcacgtttgctagaatcaggaattcagttctttagtctcaaagaggggaagttgccactcgtgccaggagtttcaatgcaatttcaaaacttgctcaaggagtttgttccaaccccttga	1200	0.0	MNRNQNQGSEDESFILSQDLFCTPDYLTPENQFPLKGFHDFNINFEEEDVPCPKSPEKPSTSKGKRRRIDSNLGDTLSSTSFGDQPVVELGNDFDFVGEEVTGMPKARDYVSHSAISLRCRVMPPPCIRNPYLESLSEREMDPFENQRSKFEGLFPTLTGGNSLSRYSTDFHEIELIGKGNFSNVFKVLKRIDGCMYAVKCSTRPLCREPERMKALMEVQALAALGFHKNIVGYHSSWFENEQVYIQMELCDHSLSVKNRPALLAAGHEAEALYQVASALQFIHEKGMAHLDVKPENIYVKNGVYKLGDFGCATLLDNSLPIEEGDARYMPLEILNENYGHLDKVDIFSLGVSIFDLITRSRLLESGIQFFSLKEGKLPLVPGVSMQFQNLLKEFVPTP	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g00062	399	Pfam	Protein kinase domain	171	365	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g00062	399	FunFam	Wee1-like protein kinase	250	399	-	-
	Pste6g00062	399	ProSiteProfiles	Protein kinase domain profile.	171	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g00062	399	Gene3D	Phosphorylase Kinase; domain 1	160	251	-	-
	Pste6g00062	399	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED	75	381	-	-
	Pste6g00062	399	Gene3D	Transferase(Phosphotransferase) domain 1	256	397	-	-
	Pste6g00062	399	MobiDBLite	consensus disorder prediction	48	84	-	-
	Pste6g00062	399	SUPERFAMILY	Protein kinase-like (PK-like)	163	393	IPR011009	-
	Pste6g00062	399	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	288	300	IPR008271	GO:0004672\|GO:0006468
	Pste6g00062	399	ProSitePatterns	Protein kinases ATP-binding region signature.	177	200	IPR017441	GO:0005524
	Pste6g00062	399	MobiDBLite	consensus disorder prediction	48	72	-	-
	Pste6g00062	399	SMART	serkin_6	171	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g00062	Pste-Chr6	187080	192083	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g00062	4	396	Core Cell Cycle Gene Families	AT1G02970	58.209	6.36e-157	450

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WEE	Pste6g00062		Pkinase	1.5e-40	CL0016