Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00059 ATGGAGGCTTTACATGACCAATATAAAGGCAAAGTCATATGGAATTTTTCAAAGAAAGCCATTCTTCAGCCATCTGAAGCTTCTCTTTCTAAGTCACCATCACCTTTTTCTCTCAATAATGAGTATAGACAAGGGATGATGGAATGTTATTGGGACACTGATAAGAAGGTAAATGGAGAAAATATTAAGGGTGCTACTGATAACATAATCAAAGGGCCGTGGACTTTGGAAGAAGATAGTGCGCTTGTGGAACTTGTGAATCAATTTGGACTGAAAAAATGGTCACAAATTGCAAAGCTATTGCATGGCAGGATGGGAAAGCAGTGTAGGGAAAGATGGCACAATCATCTTGACCCAAACATAAGGAAAGACGTGTGGACCATAGAGGAAGACAAGATTTTGATTGAAGCCCACCAAGAAGTAGGAAATAGGTGGTCTCAGATTGCTAAAAGGTTGCCTGGTCGGACTGAAAATGGTATAAAGAATCGTTGGAACTGCACCAAGAGGCGTCAGAGCTGGGAAATGCAGAACAATAGCAAATACACCACTCGCGAGAGGTCAATGCTTCATGCCTACATTAAAAAGGTCACTACTAATGAAGAAGCTACTAAGTAA 615 0.4065 MEALHDQYKGKVIWNFSKKAILQPSEASLSKSPSPFSLNNEYRQGMMECYWDTDKKVNGENIKGATDNIIKGPWTLEEDSALVELVNQFGLKKWSQIAKLLHGRMGKQCRERWHNHLDPNIRKDVWTIEEDKILIEAHQEVGNRWSQIAKRLPGRTENGIKNRWNCTKRRQSWEMQNNSKYTTRERSMLHAYIKKVTTNEEATK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00059 204 Gene3D - 70 122 - -
Pste6g00059 204 FunFam Transcriptional activator Myb isoform A 70 123 - -
Pste6g00059 204 SMART sant 122 170 IPR001005 -
Pste6g00059 204 SMART sant 70 119 IPR001005 -
Pste6g00059 204 PANTHER MYB PROTEIN-RELATED 60 181 - -
Pste6g00059 204 CDD SANT 73 117 IPR001005 -
Pste6g00059 204 CDD SANT 126 168 IPR001005 -
Pste6g00059 204 SUPERFAMILY Homeodomain-like 68 164 IPR009057 -
Pste6g00059 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 121 IPR017930 -
Pste6g00059 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 172 IPR017930 -
Pste6g00059 204 Gene3D - 125 168 - -
Pste6g00059 204 ProSiteProfiles Myb-like domain profile. 66 117 IPR001005 -
Pste6g00059 204 Pfam Myb-like DNA-binding domain 71 117 IPR001005 -
Pste6g00059 204 Pfam Myb-like DNA-binding domain 124 165 IPR001005 -
Pste6g00059 204 ProSiteProfiles Myb-like domain profile. 118 165 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00059 Pste-Chr6 180364 182437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00059 69 196 MYB Transcription Factor Family AT4G18770 59.375 6.19e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g00059 Myb_DNA-binding 1e-16 CL0123