Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g00027 TTTGAATTGTCAACCATTTCCATTTATGTTCAAACATTACACAACAAACACAACTTGTCATAGACCAAATGAGTTCACAACAATGACCACTGTATGATCATTCTTAGTTAGCCATTGTACCTTCAACTGCATCTTTCTGTTCTTGTTCTTTGTTGTTCCTCTCTTGATTTTACATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCATTCCCACCTCAAACCTTCTGTTCTTGAATCCTCTGACCAAGAAAATGGTGAGAAGGGTGAGAGAAAATTGTGGCCAAGTTTTAGTGAGTTCAGTTTAGAGCAACTTAAGGCTGTTACAAATGGGTTCTCCTCAGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTTTACAAAGGAAAACTTGATAATGGACAGTGGATTGCCATCAAACGTTTCAACAAGTTTGCTTGGCCTGATTCTCGCCAATTCCTAGAGGAAGCCAGACAAGTGGGGAGCCTTAGAAGTGAACGTCTAGCAAATTTGATTGGTTATTGCTATGAAGGGGAAGAAAGGCTTCTAGTGGCTGAGTTTATGCCACATGAAACTCTAGCCAAACATCTCTTTCATTGGGAAGCACAACCAATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTGGCTCAAGCTCTAGAATACTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGGATGCTAATCCCAGGTTGTCTTGCTTTGGACTCATGAAGAATAGTAGAGATGGCAAAAGTTACAGTACAAACTTGGCTTTCACCCCTCCAGAGTACTTAAGGACTGGTAGAGTGACTCCAGAAAGTGTTGTTTATAGTTTTGGAACACTGCTGCTAGACCTCTTGAGTGGTAAACATATTCCACCAAGCCATGCACTAGACCTGATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCTTAGAGGGCCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGCTTGCAATATGAAGCTCGAGAGAGGCCAAATGCCAAGTCTCTTGTTGCATCTCTTATGTCACTTCAGAAAGAAACAGAGGTCCCCTCTTATGTTCTGATGGGTCTACGACAAGAAACTGCATCTTCAACAAAGCAATTGTCATTGACACCTTTTGGTGAAGCATGTTTGAGACTGGATCTTACTGCAATTCATGAAATATTAGAGAAGACTGATACTGCTTTTAGAGCAAAAGACTTTGTCACTGCCATTGACTGCTACACTCAATTCATAGATGGAGGGACCATGGTGTCACCAACAGTGTATGCAAGAAGGTGTTTATCATATTTGATGAATGACATGGCACAAGAAGCTTTAGGTGATGCAATGCAAGCTCAAGTGGTATCACCAGAGTGGCCAACTGCTATGTATCTTCAAGCAGCTTGTCTTTTCAGCCTTGGAATGGAAAATGATGCACAAGAAACTCTCAAAGATGGGACTAACATGGAAGCCAGACAAACCATTAAAAACTGAAAAATTGTATAGAATTTTATTTTCTTGTCTTGAAAATTATTTCATGCCCTTTAAAGTAGTTTTGTTAGGCTTTGCTTCCAATTTCATCTATCAAGATTTATTTCTTTTCAATTTTATTTTATTTTATTGGCTTTTCTTAATGGATGGGACAAAATACAGTGACTGATTTGAAATTTTATACGC 1742 0.399 MGARCSKFSFCWFHSHLKPSVLESSDQENGEKGERKLWPSFSEFSLEQLKAVTNGFSSENIVSEHGEKAPNVVYKGKLDNGQWIAIKRFNKFAWPDSRQFLEEARQVGSLRSERLANLIGYCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLMSLQKETEVPSYVLMGLRQETASSTKQLSLTPFGEACLRLDLTAIHEILEKTDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMAQEALGDAMQAQVVSPEWPTAMYLQAACLFSLGMENDAQETLKDGTNMEARQTIKN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g00027 461 Gene3D Tetratricopeptide repeat domain 353 461 IPR011990 GO:0005515
Pste6g00027 461 SUPERFAMILY TPR-like 350 449 IPR011990 GO:0005515
Pste6g00027 461 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 362 IPR045845 GO:0004672|GO:0009742
Pste6g00027 461 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Pste6g00027 461 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Pste6g00027 461 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g00027 461 SUPERFAMILY Protein kinase-like (PK-like) 36 320 IPR011009 -
Pste6g00027 461 FunFam probable serine/threonine-protein kinase At4g35230 355 461 - -
Pste6g00027 461 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Pste6g00027 461 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Pste6g00027 461 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g00027 Pste-Chr6 80595 86837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g00027 19 310 Glycoside Hydrolase AT3G07070 32.812 8.17e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Pste6g00027 PK_Tyr_Ser-Thr 2.6e-25 CL0016