Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03541 CTTGTAAATAAATATATAAATTATGTACCCCTTAAAAAAACATAAATCATTGAATAAACAGGAGTGCAGCAAGGGCATAATAGTAAGACAACTTGCTCTTATTTTCCTTTGACCGACATCCGATAGAGAGAGAGTGAAAAGAAAAAGAATACTTGAGCGAAGTTGAAAAACCCTTAATACAGAAAGCAAAGCCAGGAACCAAAACCGACTCTGATATCTGGGAGATGTGTGGAGGTGCTATTATTTCTGACTTCATTCCGGCGGCGGTGACGGCCGGGTCTCGCCGGATCACCGCCGATTACCTGTGGCCCGATTTCAAGAAGCGCAACTCTGACTTGGACGATGACTTCGAGGCTGATTTCAGGGAATTTAAAGACGATTCCGATCTCGACTTCGACATTGACATCGACGACCACCGCCAAGTCAAGCCCTTTGCTTTTGCCGCCTCTCCCCGTCGGTCCTCCACGGCAGCTAAATCTTTGGCATTTAAAAGTCGAGCAGAGAAGTGTGTAAAGAGAAAGAGGAAGAATCAGTACAGGGGAATCCGTCAACGTCCTTGGGGAAAATGGGCAGCTGAGATCCGGGATCCGAGAAAGGGGGTTCGTGTCTGGCTCGGAACTTTCAATACAGCTGAAGAAGCTGCTAGAGCTTATGATACTGAAGCACGAAGGATCCGAGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAGGCACCACGTGCTTCTGTAAAGCGTTCCAAGGTAAATCCATATGAAAATCCAAAGACTGTTCAACCCATTGTGACCCTATGCGGACATGGATTCCTTCCTGGCTGTGGAAATGTTCTCACATCCCATCCCTCCGCTGATGATATGACCCTATACTTCAGTTCGGACCAGGGGAGTAATTCATTTGATTATGCAGATCTTGGGTGGAGTGAACAAGGCCCCAAAACTCCTGCAATCTCATCCTTGCTTTCTGCTTCCTTGGATTGTGAATCTCATTTTGTGCAAGATGTCAACCAGAAGAACAACTTGCAGTCTACCTCTCTCGATGTGGTATCCATGCAAGATGATTCTGCCAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTTTTTCAGATGCCTTATCTTGAAGGGAGCTGGGGTGATTCTTCATTGGAATCCTTGCTGTCTGGATGCTGGAAACCTGATGAATCTTTGAGCTTTGATGACATTCCGTCCATGGCTGGAGGAGTTTTTGAACTGCTTTTTCTTGGTCTCCCTGTGTAT 1265 0.4601 MCGGAIISDFIPAAVTAGSRRITADYLWPDFKKRNSDLDDDFEADFREFKDDSDLDFDIDIDDHRQVKPFAFAASPRRSSTAAKSLAFKSRAEKCVKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDTEARRIRGKKAKVNFPEEAPRASVKRSKVNPYENPKTVQPIVTLCGHGFLPGCGNVLTSHPSADDMTLYFSSDQGSNSFDYADLGWSEQGPKTPAISSLLSASLDCESHFVQDVNQKNNLQSTSLDVVSMQDDSAKTLSEELVDIESELKFFQMPYLEGSWGDSSLESLLSGCWKPDESLSFDDIPSMAGGVFELLFLGLPVY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03541 347 PANTHER DNA-BINDING DOMAIN 84 256 IPR044808 GO:0003700|GO:0009873
Pste5g03541 347 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Pste5g03541 347 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Pste5g03541 347 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Pste5g03541 347 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Pste5g03541 347 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Pste5g03541 347 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Pste5g03541 347 Gene3D AP2/ERF domain 102 162 IPR036955 GO:0003700|GO:0006355
Pste5g03541 347 CDD AP2 103 161 IPR001471 GO:0003700|GO:0006355
Pste5g03541 347 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03541 Pste-Chr5 30128392 30130357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03541 1 337 AP2-EREBP Transcription Factor Family AT1G53910 43.041 2.47e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste5g03541 AP2 5.7e-12 CL0081