Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03527 GAATTCAAGGTAGGTCAGCCATAACTCCATGGAGCTGATGCAACAAGTTAAAGGTAATTATTCTGATAGCAGAGAGGAAGAGGAGGAAGAGGAAGCAGCAGAGATTATCACTAGGACAAGGGAAGCAGAAAGCAGCAGGTTACACCAGCAAGATGGAGCATCGAATTTCGGAAAGAAGCTAGAATTGATGGAGTTGTCGCTAGGGAGCAACAAGGAAGGAGGGGTTCATGATGAAGAAGGTGAGGGTGGGAAGGAAGTGGTGGAGAAAGAGCACATTGGTGACGCCGAGCGATGTAGGGAAACTGAACAGGTTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTTCCCTTGACTCCTCATCCAATGAGAAGGGTCTTCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGGTATTCATATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCCGGGGACACTGTCTCCTTCCACCGTGGCCTTGGAGATTTGTATAGACAGAGGCTCTACATAGATTGGAGGAGAAGGACTGAGAATGTCCATTCCCATGCCCCTGATCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCTCCAATTCCATGCCTCCTCGCTACAACCATCTCCATCTCAACAATTACAACAACCTATTCACCTTCCAGCAAAACCAGTACCTTCCACCTCCACCTCATCCTCATCCTCATCCTCATCCTCCTCATCATCATCATCACAACAATTATGCTCACCACAATTCCGGATCTGCCTCTCTCTATTACCTCAGGTCAATGCCTGGGCCTGATCAAAATCTGAATCTGCAAGGGAGACTCCCCATCATCATTGATTCTGTGCCCGTTAACGTTAATGTTGCTCATCGCCATGCCGCCACTGCTGCTGCTGCTACCGCTACTAGTAACGGAAAAAGACTAAGGCTATTTGGGGTCAACATGGAATGTGCCTCTTCTCCTGAAGATTCCAAAGCCTTCTCCTCCTCTTCTACTACAACAGTCGGGAATTCATCGCTTCCCTCTTCTTCTCTTCATCACCGCCTGAGGGTGCCCCATGCCCATCAAGACCCTCTTTCTTCCTCAGCAAGGTTTGCGGATCACAAAGGTGGAGGGGGGGCTTCCACTGCCACTGCCACTGCCTCCCTCTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCGGCACTGATAAAATAAATTCGTCACCACCAATAATGAATGGAGAAGATTTAGTTTCGATTACGTATAAGTTAGCATTTCAACTTGTTGGCACGTTATCAACTCCACGGACC 1354 0.4867 MELMQQVKGNYSDSREEEEEEEAAEIITRTREAESSRLHQQDGASNFGKKLELMELSLGSNKEGGVHDEEGEGGKEVVEKEHIGDAERCRETEQVGDTEAARGEVLSLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFHRGLGDLYRQRLYIDWRRRTENVHSHAPDPLFLPSIRWYSLPPSNSMPPRYNHLHLNNYNNLFTFQQNQYLPPPPHPHPHPHPPHHHHHNNYAHHNSGSASLYYLRSMPGPDQNLNLQGRLPIIIDSVPVNVNVAHRHAATAAAATATSNGKRLRLFGVNMECASSPEDSKAFSSSSTTTVGNSSLPSSSLHHRLRVPHAHQDPLSSSARFADHKGGGGASTATATASLCCLIWIPLCSIGTDKINSSPPIMNGEDLVSITYKLAFQLVGTLSTPRT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03527 442 MobiDBLite consensus disorder prediction 234 260 - -
Pste5g03527 442 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 109 340 IPR044800 GO:0003700
Pste5g03527 442 MobiDBLite consensus disorder prediction 81 107 - -
Pste5g03527 442 ProSiteProfiles B3 DNA-binding domain profile. 119 185 IPR003340 GO:0003677
Pste5g03527 442 MobiDBLite consensus disorder prediction 331 357 - -
Pste5g03527 442 MobiDBLite consensus disorder prediction 332 356 - -
Pste5g03527 442 MobiDBLite consensus disorder prediction 1 46 - -
Pste5g03527 442 SMART B3_2 92 185 IPR003340 GO:0003677
Pste5g03527 442 MobiDBLite consensus disorder prediction 244 258 - -
Pste5g03527 442 Gene3D - 97 193 IPR015300 -
Pste5g03527 442 Pfam B3 DNA binding domain 113 184 IPR003340 GO:0003677
Pste5g03527 442 SUPERFAMILY DNA-binding pseudobarrel domain 109 168 IPR015300 -
Pste5g03527 442 MobiDBLite consensus disorder prediction 81 98 - -
Pste5g03527 442 MobiDBLite consensus disorder prediction 24 38 - -
Pste5g03527 442 CDD B3_DNA 121 167 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03527 Pste-Chr5 29685577 29687230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03527 70 331 RAV Transcription Factor Family AT2G46870 44.928 1.55e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste5g03527 B3 3.5e-19 CL0405