LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste5g03522	AGAAGTGGATAACAGAGTAGAAGTGGAGATGGCGAGCGTAGCAGATGAGAAAGAGAAGATGAAGGAAGGCGAAGAAGTAGAAGATGAAGAAAGTTACTCTCGAGCTATGCAGCTTAGCACCTCAGTGGTGGTTTCGATGGCACTGCAAACGGCAACGGAGCTGGGGGTATTTGACGTGTTGCAAGAAGCGGGTGAAGGTGCTAAGGTCTCAGCCAAGGAGATAGCATCAAAACTATGTTGCAACAACAACCCAGAAGCAGCAACAATGTTAGATCGTGTCCTTGCTCTTCTCGCCTCTCACTCCATTCTTAACTGTTCCCTCATTCCCGACCCCCAAAATCTTGGGACATTTCACAGGCTCTACACCATCACTCCCGTCTCCACGTTCTTTGTTCGTAATTCTGATGGTGCTTCATTGGGACCCTTCATCGCCTTGATCCAAGACAACATCTTCCTACACACCTGGTCCGAGCTGAAAAATGCAATTCGGAACGGGGGTATTCCGTTCAACAAGGTTTATGGCACTCATGCTTTTGAGTATCCAAGCTTGGATTCAAGGTTCAATCAAGTTTTTAACACAGCTATGATCAATCACACTACATTAGTGATGAAGAAGGTTCTGGAATGCTACAAAGGTTTTGAAGACATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAACATTAACTTGATCACTTCCAAGTACCCTCATATCCAGGGTATCAATTTCGATTTGCCTCATGTCATACAACATGCTCCTTCCTATCCTGGAGTGGAACACGTTGCCGGAGATATGTTTGAAAATGTGCCTAAAGGAGACGCCATCTTTATGAAGTGGATACTTCATGATTGGAGTGATGAGTACTGTGTGAAGCTGTTGAAGAACTGCTATGATGCAATTCCTGATGATGGAAAAGTGATAGTTGTGGAGGCAGTTCTTCCGATTATACCAGAGACTAATGCTGCTTGGAAGGCCGTTTCCCAAACCGATGTTCTGATGATGACTCAAAACCCCGGTGGGAAAGAGCGATCTGACCAACTATTCATGGATTTGGCAACTGCTGCTGGATTTAGTGGTATCAGATATCAATCTTATGTCCGTACCTTCTGGGTTATGGAGTTCTTCAAATAATTGTAATGCTTTTAAATCGCTATTTCAAATTAACAAAACACTAACAAGCGCCTATTATACTATGCTCAGTGTTTCAATTTATAATAACTAGCCGGATTCAATGCACGGG	1247	0.4379	MASVADEKEKMKEGEEVEDEESYSRAMQLSTSVVVSMALQTATELGVFDVLQEAGEGAKVSAKEIASKLCCNNNPEAATMLDRVLALLASHSILNCSLIPDPQNLGTFHRLYTITPVSTFFVRNSDGASLGPFIALIQDNIFLHTWSELKNAIRNGGIPFNKVYGTHAFEYPSLDSRFNQVFNTAMINHTTLVMKKVLECYKGFEDIKRLVDVGGGLGININLITSKYPHIQGINFDLPHVIQHAPSYPGVEHVAGDMFENVPKGDAIFMKWILHDWSDEYCVKLLKNCYDAIPDDGKVIVVEAVLPIIPETNAAWKAVSQTDVLMMTQNPGGKERSDQLFMDLATAAGFSGIRYQSYVRTFWVMEFFK	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste5g03522	369	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	27	369	IPR016461	GO:0008168
	Pste5g03522	369	FunFam	Caffeic acid 3-O-methyltransferase	4	121	-	-
	Pste5g03522	369	Pfam	Dimerisation domain	37	89	IPR012967	GO:0046983
	Pste5g03522	369	Pfam	O-methyltransferase domain	146	351	IPR001077	GO:0008171
	Pste5g03522	369	SUPERFAMILY	"Winged helix" DNA-binding domain	18	124	IPR036390	-
	Pste5g03522	369	PIRSF	O-mtase	4	369	IPR016461	GO:0008168
	Pste5g03522	369	PANTHER	O-METHYLTRANSFERASE	26	354	IPR016461	GO:0008168
	Pste5g03522	369	FunFam	Caffeic acid O-methyltransferase	122	369	-	-
	Pste5g03522	369	MobiDBLite	consensus disorder prediction	1	24	-	-
	Pste5g03522	369	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	127	367	IPR029063	-
	Pste5g03522	369	Gene3D	Vaccinia Virus protein VP39	122	369	IPR029063	-
	Pste5g03522	369	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pste5g03522	369	Gene3D	-	2	121	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste5g03522	Pste-Chr5	29333957	29337423	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste5g03522	16	354	Monolignol Biosynthesis Gene Families	AT5G54160	52.632	6.54e-132	380