Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03517 GGCTGTTTGAAAATTGCGAAATTCTGTTTCTTTCTCTCTTTGCCTCCACTCAATCAGGCAGACTTTTAAGATATTTTCACTGCTCAACTTAAGACTAAGAATGAGGTCTCTTTAGCTTCTTCTTCCTTCCCTTTTTGGCGTCCAATTAGGGCTTCGGTGTTTCGTGTACTGTTTAATTAATTAATTAATTAATGCAGCTTCAACAGATTGTTTGAGAATGGGTGAAGTAGCGGGTCTGATGCAGACGCTGGAGGAACAGAGCAACAATGCCTCCGCTGTTCGCTGGGAACGCTTTCTGCCTCGGATGGTGCTTCGGGTGCTGCTCGTCGAAGCTGATGATTCTACACGCCAGATCATTGCTGCACTTCTCCGTAAATGCAGTTATAAAGTTGCAGCTGTTTGTGATGGCTTAAAGGCTTGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACAGAAGTGGATTTGCCGTCAATATCTGGATTTTCACTTCTTAATTTAATCATGGAGCATGACATTTGCAAAACCATTCCTGTCATAATGATGTCTTCTCATGATTCAGTTAGCATGGTATTCAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAGCCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTGTGGAGAAGACATGCCATAAGCAGGCCTCCTGAAAATTTTACACTGCCACAGATCAATCTGGGTTTTGCTGCAGAAAACCATGCTACAAGCAATGACTCTAGTGGTTCTGTGGCTTCTACACCAAAAAATAATGAATGCAGTGAGAAGACAAGTGAGGCTGAAAGCACTTGTACATTGCCATTTTTGGAAGCTGAGAGCACATACATGCAAAATATGCAGGATATATCACAGCTGAAGAGCTCTTCAAATTTCAGCAATATTGACGCAGTGAAGCATGAAGCCTCTACCCAATGTGAAGAGGAATCAAATAAGCATAACGATGAAGCTGGAGAGAAATCAATATTTATATCAGAAGATGCAAGGAACAGAAAAGCTTTTAAACCAACAGGTTTAAGGCTGGGTAAAGGTTATGATTGCCATAAAACAAGAAACCAAGATGAAGTTCTAAGAATAGAGTTGAGCAAAGCCAATCCAGATATTGATAATACAGATATTCATGGATGCAGTGATGAACTGCTAGATCCTTCTACTGGGGCCATTGACTTGATTGCTACATTCAAGAGTCTTCCTAAGAGCACCAATGAAAACTGTAGTTTCATTAGTGGTAATACTGCCAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAGATTTTCTTGGAAGCACATGTAAAGCTGCATCTGAGGAAAGGAAAATGTTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATAGTAGTAGTAAGTTGTTGCAGCCCCATTTTCCAACACCAACTATCTCTGCTATATCAACAAATGCAAGTCAGAATTCTCATGAATCCCATAAATTATCAGAAAATGCATCTACTTCTCATGAATATGGTGGAAAAAATGAAAATCAGGAGAAAATCACCACTCCAGTCATTGGTCAGTCGGGTCAAGTTGATCCAAAATTATCAAACAGTCAACCTGGATTGTTTCCTGCTACAGGGGTTACTTCTGATCACAAGTCTAGGGGAAATGGAAATGTCTTCCCTTCTATGGTTTATGAATCAGATGTTCATCCCATATGGACTACAAAACCTGTGTGCCAGAAAGAGAGTTCTCCATTTCCCACAAGTGCTTCCTCCCAGTCCAACCCTCAAAGTCACAACTCAGAACATCATCTTGGGTCAGACGACGCAACCGGTGCTTCTGATAAAAATGTAAATGATCAAAACAATTTGGATTGTGAAACACACGACTCTCCTGCAGCTAGTCACAGTGCTGGTACTAGTTTTTACCATGATACAGCAAACCCTAATAGTAGTGGTGTATACGGAAGCATAGGCTGCAGAAATGATGGAAATGCTATTTCAGCTAAGATAGCCGAGTACAGCCATGAAAGTTTTATTGATAGTGGTCATCATAGTTATGATGGATTCATAGGGACAGATTCTCATCGCAACAGCCAGCGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGAGAAAAAGGTGAGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGGCCTCGGGTGAAAGGGCAGTTTGTTTGCCAAGCACACAATGATCATCCAGTAGCAGATGTGGGTGGTGGTCCCTGA 2281 0.4099 MGEVAGLMQTLEEQSNNASAVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVCDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLNLIMEHDICKTIPVIMMSSHDSVSMVFKCMLKGAADFLIKPVRKNELRNLWQHVWRRHAISRPPENFTLPQINLGFAAENHATSNDSSGSVASTPKNNECSEKTSEAESTCTLPFLEAESTYMQNMQDISQLKSSSNFSNIDAVKHEASTQCEEESNKHNDEAGEKSIFISEDARNRKAFKPTGLRLGKGYDCHKTRNQDEVLRIELSKANPDIDNTDIHGCSDELLDPSTGAIDLIATFKSLPKSTNENCSFISGNTAKFDFDTQLELSLRRDFLGSTCKAASEERKMLNHSNASAFSRYSSSKLLQPHFPTPTISAISTNASQNSHESHKLSENASTSHEYGGKNENQEKITTPVIGQSGQVDPKLSNSQPGLFPATGVTSDHKSRGNGNVFPSMVYESDVHPIWTTKPVCQKESSPFPTSASSQSNPQSHNSEHHLGSDDATGASDKNVNDQNNLDCETHDSPAASHSAGTSFYHDTANPNSSGVYGSIGCRNDGNAISAKIAEYSHESFIDSGHHSYDGFIGTDSHRNSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVCQAHNDHPVADVGGGP 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03517 687 MobiDBLite consensus disorder prediction 417 486 - -
Pste5g03517 687 MobiDBLite consensus disorder prediction 542 574 - -
Pste5g03517 687 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Pste5g03517 687 CDD psREC_PRR 34 137 - -
Pste5g03517 687 Pfam CCT motif 631 671 IPR010402 GO:0005515
Pste5g03517 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 378 IPR045279 GO:0009736
Pste5g03517 687 MobiDBLite consensus disorder prediction 508 574 - -
Pste5g03517 687 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Pste5g03517 687 MobiDBLite consensus disorder prediction 177 201 - -
Pste5g03517 687 SMART REC_2 32 147 IPR001789 GO:0000160
Pste5g03517 687 SUPERFAMILY CheY-like 32 159 IPR011006 -
Pste5g03517 687 MobiDBLite consensus disorder prediction 417 489 - -
Pste5g03517 687 Gene3D - 30 274 - -
Pste5g03517 687 MobiDBLite consensus disorder prediction 244 266 - -
Pste5g03517 687 ProSiteProfiles CCT domain profile. 631 673 IPR010402 GO:0005515
Pste5g03517 687 MobiDBLite consensus disorder prediction 508 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03517 Pste-Chr5 29294006 29298157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03517 630 675 Response Regulator Gene Family AT5G24470 84.783 5.75e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pste5g03517 Response_reg 6e-22 CL0304