Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03503 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGATGAGGAAAATTACATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGACGGAGGTGAAGATGAAAATGCAGAAGGTAGTGTTGACGAACATGAATATGAGGACTCGGCTGCTGAGGCTGGTGGGAAAGACCAATTGCCTGAAGCAGAAAAAAGTGACATTGCCACTGAGTATGGGGATGATGAGCAAAAACCATCTTTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGGCTTCCTCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGTGAGCCAATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGATACTGGTGAAAACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCTCAAAAAGCTATTGAGGAGATACATAACAAGGAATTTAAGGGGAAAGCTTTGAGGTGCTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACGGAAGATGACTTTAGGAGAGTCATTGAAGGTGTTGGTCCTGGAGTTGAAAATATTGAGCTCATAAAGGATCCTCAAAATCCAAGTAGGAATCGTGGGTTTGCTTTTGTTTTATATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCTAATTTTAAGCTGGATGGCAATACCCCAACTGTCACTTGGGCAGATCCAAAGAACTCTCCTGATCATTCTGCTTCTTCACAGATACTGCCTTTGGTTGTTAAGCCTCTGATTCAGTTTGGCATTAAGGTTAAAGCTCTATATGTCAAAAACATACCAGAGAATGTTACTACTGAACAACTGAAGGAACTATTCCGCCGTCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCGGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACAGAGAAATATGAAATTGATGGCCAAGCGCTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCCGGACTTCATCCAAACCATCTTCCACATCCTGCATATGGTAACTTTTCTGGAAATCCTTACGGTTCTTTAGGGGCTGGATACGGTGTTGCTTCTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTTTTGCCAGATGGTCGAATTGGTTATGTCCTTCAGCAACCTGGTGTACAAGTGCCACCTACCCGACCCCGCAGAATTGAACGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGTAGTGGCAATGATGAAGGCAACCGTAGTAGAAGGTATCGACCTTATTAAGGGAAGAAGACTGATAAATGCGATGACGCTCGTTCTCCCCCAACTATCTTGGTGGTGAGGGGGACTTTGGGAACCAGGGACGTGTAATTCATTTGCTATATACGTTGACAGAAAATCCCTTCATAATCCCTATCCCATAAAAAAGGGAAAAAAAAAAGAAAAATATAAAGAGTTAGGATTAGGACCAGTGATATTCTATTTAACTGTTTAATGTCGGTGTCTACTGCTGTTTGACGAGTCACAGCAGAGTAATTGGCTTCTTTTCTGCTTGTAATGCTTCTTGGCATTTTTTATTGACAACCAGTAGAAAATTGTGTTAATTTGGCTTCAGCAACATACCGGTTTTGTTGCTCATATTTCATGCTCTTAATGGCGTTTATCTGTTGGTGGCAGTATTGTGAGCTTTAATAGGGTGACAATTTAGCATTGCTAACCAATGCTTCTTTCCTACAATCATAAGCCCAAGTCTTTGTCATTCATATTCATAAAATGCATTGGGTCAAAATTATAACAAGATTTCAAATAAAGTAGTTCAGCAACACAGTTGATTCAAAGGAATTAACAAGAAAAGTATTTTTGTACCTGAGTTTTGG 2084 0.4112 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVDEHEYEDSAAEAGGKDQLPEAEKSDIATEYGDDEQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHNKEFKGKALRCSLSETKHRLFIGNVPKTWTEDDFRRVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSANFKLDGNTPTVTWADPKNSPDHSASSQILPLVVKPLIQFGIKVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQALEVVLAKPQADKKPDGGYAYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVASGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPTRPRRIERSNGPSGQPGRGGGSGNDEGNRSRRYRPY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03503 496 SMART rrm1_1 187 264 IPR000504 GO:0003723
Pste5g03503 496 SMART rrm1_1 297 369 IPR000504 GO:0003723
Pste5g03503 496 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pste5g03503 496 MobiDBLite consensus disorder prediction 1 84 - -
Pste5g03503 496 MobiDBLite consensus disorder prediction 8 48 - -
Pste5g03503 496 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Pste5g03503 496 Gene3D - 8 186 IPR012677 -
Pste5g03503 496 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 12 460 - -
Pste5g03503 496 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Pste5g03503 496 Gene3D - 187 267 IPR012677 -
Pste5g03503 496 MobiDBLite consensus disorder prediction 454 496 - -
Pste5g03503 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Pste5g03503 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 366 IPR000504 GO:0003723
Pste5g03503 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Pste5g03503 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Pste5g03503 496 MobiDBLite consensus disorder prediction 49 84 - -
Pste5g03503 496 SUPERFAMILY RNA-binding domain, RBD 103 269 IPR035979 GO:0003676
Pste5g03503 496 CDD RRM_SF 108 180 - -
Pste5g03503 496 Gene3D - 293 413 IPR012677 -
Pste5g03503 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pste5g03503 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723
Pste5g03503 496 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Pste5g03503 496 SUPERFAMILY RNA-binding domain, RBD 274 385 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03503 Pste-Chr5 29114438 29120972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03503 108 427 Eukaryotic Initiation Factors Gene Family AT1G71770 25.519 6.57e-17 82.0