Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g03479 ATGCAGCAAGTGGAGCAAACGAATCCAGACCCAAGTCTGCCTGAGACTCATAAACAGACTTTTCACTCATTTAGTAAGTTATTAACTGCTTCTGATACTAGCACACATGGAGGATTTTCGGTTCTACGGAGGCATGCCACCGAATGTCTGCCTCAATTGGACATGACCCAAACTACCCCTACCCAGGAATTGGTAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTGACATCCAAGAGACTGGTTGCTGGAGATGCTTTTGTATTTTTAAGGGGAGAGAATGGTGGCCTGAGAGTTGGTGTTAGGCGTGCAGCTTGGCAGCAGAGCCCCATGCCTTCCTCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACAAGTACTATGTTTGTGGTTTATTATAAACCCAGGATTAGCCAGTTTATTATTGGTCTAAACAAATACATGGAGGCAGTCAAAAACAATTTTTCAGTTGGCATGCGTTTTAAGATGAGATTTGAGGTGGAGGACTCTCCTGAGAGAAGGTTTTCTGGTACTATTGTTGGAGTTGGGGATGTATCTCCTGGATGGCCGAACTCTGAGTGGCGTTCGTTGAAGGTTCAATGGGATGAAGCAGCAATAATTCCTAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTTGTTGCTTCTAGTGCTTTAAATGGCACTCAACAAGTTGTGAAGAGCAAAAGGTCCAGGACTGCTGAGGTTTCATCCTCTGAAATTGGTCCAAATTCCCCCGCTCCAGTTTTCTGGTATCATGGACCATCCATATCCCATGGCCCTACAGTATTAGGTGGCAGTGCAGAGGTCCAAAGCAATGAAAACACAGTTGTATGGCGTTCGAGCCAGAAAGAAATTAATGGCAATTCTATGAATGATGGTGTGGAGGGAAAGTGGGGTTGTTCCCCATATTCAAACCCTAAAAACAGCAAAGCTGTCACAGCACAATCGTGGGTTTCATCACATGATCCCGTGGAATGTGGTGGTAAAAGGAGTGAGAATCCCATGGATTGCTGGTTATTTGGAGTTAATTTGTCTAACAAATCAACTAATGTTGGCCTTCCGGATAAAGAATGGGTATGTCCGGCTATTATTCCTAGTGGTCCCAGATGTGATACTGAGACCGGTCAGAATCCCAATTATTCACTATCCAATAAGGAGCAGAAGCAAATTATTTGTGATGGCGAGAGACACACCAAGCAGGCATCCACCAGGACTCGGACCAAGGTGCAAATGCATGGTGTTGCTGTTGGTCGTGCAGTTGACCTAACAGTCCTTAAAGATTATGATGATCTCATAGATGAGCTTGAGAAATTGTTTGATATTATTAAGGGTGAACTTCGAATGCAAACCAAATGGGCAATTACTTTCACCGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGTACCATGGTAAAGAGGATTTTCATTTATTCAAGGGAAGATGTGAAGAAGACGAAAAGCAAGCAATCTAGTTCTTCATCAGAGGGTGAAGAGACTCTGTTGAGCCCAGATTCACAGAATAGGGATGATACTCAGCAAAACTCTAGCGATTTGACACCTTAACCTATTTAATTTCTTTGGTTTGGGAGGGGTTTGGATTGCTTGATTTTATTTTTTTTATGCGACTTTAAAATTGTAGAGTAGTACTTCACGTGTGTATGCAATTGGACTAATATAATATAATGTATAATACTATAGGAACTTCAGTGGGATTTTAG 1859 0.4293 MQQVEQTNPDPSLPETHKQTFHSFSKLLTASDTSTHGGFSVLRRHATECLPQLDMTQTTPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGGLRVGVRRAAWQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRISQFIIGLNKYMEAVKNNFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWPNSEWRSLKVQWDEAAIIPRPERVSSWEIEPFVASSALNGTQQVVKSKRSRTAEVSSSEIGPNSPAPVFWYHGPSISHGPTVLGGSAEVQSNENTVVWRSSQKEINGNSMNDGVEGKWGCSPYSNPKNSKAVTAQSWVSSHDPVECGGKRSENPMDCWLFGVNLSNKSTNVGLPDKEWVCPAIIPSGPRCDTETGQNPNYSLSNKEQKQIICDGERHTKQASTRTRTKVQMHGVAVGRAVDLTVLKDYDDLIDELEKLFDIIKGELRMQTKWAITFTDDENDMMLVGDDPWPEFCTMVKRIFIYSREDVKKTKSKQSSSSSEGEETLLSPDSQNRDDTQQNSSDLTP 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g03479 567 ProSiteProfiles PB1 domain profile. 444 528 IPR000270 GO:0005515
Pste5g03479 567 MobiDBLite consensus disorder prediction 539 567 - -
Pste5g03479 567 CDD B3_DNA 22 124 IPR003340 GO:0003677
Pste5g03479 567 FunFam Auxin response factor 22 126 - -
Pste5g03479 567 SUPERFAMILY CAD & PB1 domains 441 521 - -
Pste5g03479 567 Pfam AUX/IAA family 434 525 IPR033389 -
Pste5g03479 567 Gene3D - 21 126 IPR015300 -
Pste5g03479 567 FunFam Auxin response factor 185 256 - -
Pste5g03479 567 Pfam B3 DNA binding domain 24 125 IPR003340 GO:0003677
Pste5g03479 567 Gene3D - 439 533 - -
Pste5g03479 567 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 532 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste5g03479 567 Gene3D - 185 258 - -
Pste5g03479 567 MobiDBLite consensus disorder prediction 529 567 - -
Pste5g03479 567 SUPERFAMILY DNA-binding pseudobarrel domain 12 153 IPR015300 -
Pste5g03479 567 Pfam Auxin response factor 150 229 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste5g03479 567 ProSiteProfiles B3 DNA-binding domain profile. 24 126 IPR003340 GO:0003677
Pste5g03479 567 SMART B3_2 24 126 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g03479 Pste-Chr5 28326420 28329208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g03479 5 531 B3 DNA Binding Superfamily AT4G23980 58.614 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste5g03479 AUX_IAA 8.9e-12 CL0072